miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
729 5' -48.8 AC_000020.1 + 6698 0.66 0.882846
Target:  5'- aCCA-GGCUGUGAAUGaguuuUACAuGCUugGc -3'
miRNA:   3'- -GGUaCCGACAUUUAU-----GUGU-CGGugCa -5'
729 5' -48.8 AC_000020.1 + 7460 0.68 0.786684
Target:  5'- aCCAgucUGcGCUGUGu----GCGGCCACGUg -3'
miRNA:   3'- -GGU---AC-CGACAUuuaugUGUCGGUGCA- -5'
729 5' -48.8 AC_000020.1 + 19605 0.69 0.742087
Target:  5'- cCCGguggGGCUGaugg-ACGCGuGCCACGUc -3'
miRNA:   3'- -GGUa---CCGACauuuaUGUGU-CGGUGCA- -5'
729 5' -48.8 AC_000020.1 + 13333 0.69 0.742087
Target:  5'- gCCu--GCUGUGGGUaaaguccaccGCACAGCCugGa -3'
miRNA:   3'- -GGuacCGACAUUUA----------UGUGUCGGugCa -5'
729 5' -48.8 AC_000020.1 + 10980 0.7 0.706006
Target:  5'- gUCGUcGGCUGUAGGcugacucUGCAUGGCCGCc- -3'
miRNA:   3'- -GGUA-CCGACAUUU-------AUGUGUCGGUGca -5'
729 5' -48.8 AC_000020.1 + 30187 0.7 0.695356
Target:  5'- gCUGUGGCUGgAAAgccugcGCACAGCC-CGa -3'
miRNA:   3'- -GGUACCGACaUUUa-----UGUGUCGGuGCa -5'
729 5' -48.8 AC_000020.1 + 3200 0.8 0.206112
Target:  5'- aCGUGGCUGUGuAUuUACAGCCAUGg -3'
miRNA:   3'- gGUACCGACAUuUAuGUGUCGGUGCa -5'
729 5' -48.8 AC_000020.1 + 3257 1.11 0.001689
Target:  5'- uCCAUGGCUGUAAAUACACAGCCACGUa -3'
miRNA:   3'- -GGUACCGACAUUUAUGUGUCGGUGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.