Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 35059 | 0.68 | 0.723024 |
Target: 5'- gGCUCGACaacUGACCCG--CCUCGGCc -3' miRNA: 3'- -CGAGUUGcc-ACUGGGCuaGGAGUUGc -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 31897 | 0.71 | 0.546056 |
Target: 5'- uCUCGACGGaaccGCUCGGucUCCUCGGCGg -3' miRNA: 3'- cGAGUUGCCac--UGGGCU--AGGAGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 4153 | 0.72 | 0.524432 |
Target: 5'- gGC-CGGCGGUGACCCcaaacaaCUCGGCGu -3' miRNA: 3'- -CGaGUUGCCACUGGGcuag---GAGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 6512 | 0.76 | 0.316872 |
Target: 5'- aGCUCGGCccgcUGGCCagccaGAUCCUCAACGg -3' miRNA: 3'- -CGAGUUGcc--ACUGGg----CUAGGAGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 25941 | 0.77 | 0.258358 |
Target: 5'- cGCUCAGCGGUGccuucuGCUCGAUCCggcACGg -3' miRNA: 3'- -CGAGUUGCCAC------UGGGCUAGGaguUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 11988 | 1.11 | 0.001384 |
Target: 5'- cGCUCAACGGUGACCCGAUCCUCAACGc -3' miRNA: 3'- -CGAGUUGCCACUGGGCUAGGAGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 10314 | 0.66 | 0.850346 |
Target: 5'- uGCUCcgcauggaGACGGUcuggcguGACCCGAgcaCCcCGACGu -3' miRNA: 3'- -CGAG--------UUGCCA-------CUGGGCUa--GGaGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 21298 | 0.66 | 0.82436 |
Target: 5'- cGCUgGGCGGUcugaugGAUgCGGUCCUgAACc -3' miRNA: 3'- -CGAgUUGCCA------CUGgGCUAGGAgUUGc -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 41619 | 0.67 | 0.795641 |
Target: 5'- gGCUCGAUGGagcaccGACCCugGAUCUcCAGCa -3' miRNA: 3'- -CGAGUUGCCa-----CUGGG--CUAGGaGUUGc -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 28665 | 0.67 | 0.775598 |
Target: 5'- uGCUCAccuggaaGGUGauGCCC--UCCUCGGCGa -3' miRNA: 3'- -CGAGUug-----CCAC--UGGGcuAGGAGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 33749 | 0.68 | 0.733773 |
Target: 5'- aGCUCGuUGGcUGACUccaCGAugUCCUCGGCGu -3' miRNA: 3'- -CGAGUuGCC-ACUGG---GCU--AGGAGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 15286 | 0.66 | 0.859696 |
Target: 5'- cGCUCGGCcuGUacuacGGCCCGAacgCCUCcACGa -3' miRNA: 3'- -CGAGUUGc-CA-----CUGGGCUa--GGAGuUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 30060 | 0.67 | 0.774579 |
Target: 5'- cGCgccugCAGCGGguugacgaacgugUGGCaCCGGUCCUCGGa- -3' miRNA: 3'- -CGa----GUUGCC-------------ACUG-GGCUAGGAGUUgc -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 5549 | 0.66 | 0.814981 |
Target: 5'- gGCUC-ACGGcaggGGCCUGGUCC-CcACGc -3' miRNA: 3'- -CGAGuUGCCa---CUGGGCUAGGaGuUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 878 | 0.69 | 0.701259 |
Target: 5'- aGCUCGAUGG-GcAUCCGcUCCUCGAa- -3' miRNA: 3'- -CGAGUUGCCaC-UGGGCuAGGAGUUgc -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 32089 | 0.91 | 0.034018 |
Target: 5'- uGCUCAACGGcGAgCCGAUCCUCGACa -3' miRNA: 3'- -CGAGUUGCCaCUgGGCUAGGAGUUGc -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 6473 | 0.79 | 0.197438 |
Target: 5'- uGCUCGACgccccuGGUGACCUGAUCCaccggggagguggUCAGCGu -3' miRNA: 3'- -CGAGUUG------CCACUGGGCUAGG-------------AGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 44924 | 0.71 | 0.578993 |
Target: 5'- gGCUCGACGGUGGagaCCGcguugaCCggCAACGg -3' miRNA: 3'- -CGAGUUGCCACUg--GGCua----GGa-GUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 15178 | 0.71 | 0.578993 |
Target: 5'- cGCUCGAccagcCGGUGGCuCCaGUCCaggUCGACGg -3' miRNA: 3'- -CGAGUU-----GCCACUG-GGcUAGG---AGUUGC- -5' |
|||||||
7291 | 3' | -52.7 | NC_001900.1 | + | 10253 | 0.69 | 0.701259 |
Target: 5'- gGCUCucuGCGGc--CCUGAUggCCUCAGCGg -3' miRNA: 3'- -CGAGu--UGCCacuGGGCUA--GGAGUUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home