Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7292 | 3' | -53.8 | NC_001900.1 | + | 44273 | 0.67 | 0.670979 |
|
Target: 5'- aGACCGGCGAcUACUucaugGUGgggaagAAGGGCa -3' miRNA: 3'- -CUGGCCGCU-AUGG-----UACaag---UUCCCGa -5' |
|||||||
| 7292 | 3' | -53.8 | NC_001900.1 | + | 17407 | 0.67 | 0.659727 |
|
Target: 5'- --aCGGCGuguucgacgGUGCCAUG--CAAGGGCUu -3' miRNA: 3'- cugGCCGC---------UAUGGUACaaGUUCCCGA- -5' |
|||||||
| 7292 | 3' | -53.8 | NC_001900.1 | + | 29955 | 0.68 | 0.648448 |
|
Target: 5'- cGACCGGaCGAUGauCCAggcGUUCAAGGaCg -3' miRNA: 3'- -CUGGCC-GCUAU--GGUa--CAAGUUCCcGa -5' |
|||||||
| 7292 | 3' | -53.8 | NC_001900.1 | + | 3525 | 0.68 | 0.614559 |
|
Target: 5'- uGGCCGGgguguCGGUGCCGUugagGUUCAGGGuGUa -3' miRNA: 3'- -CUGGCC-----GCUAUGGUA----CAAGUUCC-CGa -5' |
|||||||
| 7292 | 3' | -53.8 | NC_001900.1 | + | 19090 | 0.68 | 0.596526 |
|
Target: 5'- cGACCGGUGAccagGgCGUGUUCcuggccacagacgugGAGGGUUg -3' miRNA: 3'- -CUGGCCGCUa---UgGUACAAG---------------UUCCCGA- -5' |
|||||||
| 7292 | 3' | -53.8 | NC_001900.1 | + | 43541 | 0.72 | 0.412486 |
|
Target: 5'- uGGCCGGcCGAU-CCAUGacgCGGGGGUg -3' miRNA: 3'- -CUGGCC-GCUAuGGUACaa-GUUCCCGa -5' |
|||||||
| 7292 | 3' | -53.8 | NC_001900.1 | + | 15172 | 0.72 | 0.412486 |
|
Target: 5'- aGGgCGGCGAUuCCGaGgUCAAGGGCUc -3' miRNA: 3'- -CUgGCCGCUAuGGUaCaAGUUCCCGA- -5' |
|||||||
| 7292 | 3' | -53.8 | NC_001900.1 | + | 12130 | 1.08 | 0.001214 |
|
Target: 5'- aGACCGGCGAUACCAUGUUCAAGGGCUa -3' miRNA: 3'- -CUGGCCGCUAUGGUACAAGUUCCCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home