miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7292 5' -55.2 NC_001900.1 + 28368 0.66 0.71245
Target:  5'- gGAGCAGGaCGc-GGACUucgUCGCgGg -3'
miRNA:   3'- gCUCGUCC-GCuuCCUGAugaAGCGgC- -5'
7292 5' -55.2 NC_001900.1 + 12655 0.66 0.71245
Target:  5'- cCGAGCcgauccugaacGGcGCGAAGGACcagaACggUCGCCc -3'
miRNA:   3'- -GCUCG-----------UC-CGCUUCCUGa---UGa-AGCGGc -5'
7292 5' -55.2 NC_001900.1 + 24589 0.66 0.71245
Target:  5'- gGAGCuGGCGGugguGGACaaggcauggGCUcCGCCa -3'
miRNA:   3'- gCUCGuCCGCUu---CCUGa--------UGAaGCGGc -5'
7292 5' -55.2 NC_001900.1 + 40459 0.66 0.690726
Target:  5'- uGAGCgccaAGGCGuacGAGGAgaUGCUgacccggcUCGCCGa -3'
miRNA:   3'- gCUCG----UCCGC---UUCCUg-AUGA--------AGCGGC- -5'
7292 5' -55.2 NC_001900.1 + 1146 0.66 0.679772
Target:  5'- gGGGCAGGCGGcguggguGGACUuggaggcgGCgguggagcCGCCGg -3'
miRNA:   3'- gCUCGUCCGCUu------CCUGA--------UGaa------GCGGC- -5'
7292 5' -55.2 NC_001900.1 + 46180 0.66 0.679772
Target:  5'- uCGAGguGGuCGAugAGGAUcugGCgauggcUCGCCGa -3'
miRNA:   3'- -GCUCguCC-GCU--UCCUGa--UGa-----AGCGGC- -5'
7292 5' -55.2 NC_001900.1 + 16829 0.67 0.613465
Target:  5'- cCGAGCAGGCGGcucAGGAa-GC--CGCCc -3'
miRNA:   3'- -GCUCGUCCGCU---UCCUgaUGaaGCGGc -5'
7292 5' -55.2 NC_001900.1 + 1657 0.67 0.602414
Target:  5'- aCGAGgAGGCGugguucggcAAGGGCcACguccCGCCGg -3'
miRNA:   3'- -GCUCgUCCGC---------UUCCUGaUGaa--GCGGC- -5'
7292 5' -55.2 NC_001900.1 + 1497 0.68 0.591388
Target:  5'- -aAGCAGGCGAuGGACga---CGCCa -3'
miRNA:   3'- gcUCGUCCGCUuCCUGaugaaGCGGc -5'
7292 5' -55.2 NC_001900.1 + 11860 0.68 0.591388
Target:  5'- --uGCAGGgCG-AGGACgccgACUcgaUCGCCGa -3'
miRNA:   3'- gcuCGUCC-GCuUCCUGa---UGA---AGCGGC- -5'
7292 5' -55.2 NC_001900.1 + 27632 0.68 0.580397
Target:  5'- uCGAGCAGGCGuagcAGGGCUcucgggugACguagagggUCGCUc -3'
miRNA:   3'- -GCUCGUCCGCu---UCCUGA--------UGa-------AGCGGc -5'
7292 5' -55.2 NC_001900.1 + 8502 0.68 0.547717
Target:  5'- --cGCAGGagugGAAccGCUGCUUCGCCGa -3'
miRNA:   3'- gcuCGUCCg---CUUccUGAUGAAGCGGC- -5'
7292 5' -55.2 NC_001900.1 + 7342 0.7 0.453992
Target:  5'- aGAGCGGGCGAagaacgugAGGGCgucgaugaugGCUccCGCCa -3'
miRNA:   3'- gCUCGUCCGCU--------UCCUGa---------UGAa-GCGGc -5'
7292 5' -55.2 NC_001900.1 + 10420 0.76 0.205638
Target:  5'- uGAGCGGGCucgcaagGAcauGGGCUACUccaUCGCCGa -3'
miRNA:   3'- gCUCGUCCG-------CUu--CCUGAUGA---AGCGGC- -5'
7292 5' -55.2 NC_001900.1 + 20803 0.78 0.140576
Target:  5'- uGAGCuGGUGGuucucaAGGAuCUGCUUCGCCGu -3'
miRNA:   3'- gCUCGuCCGCU------UCCU-GAUGAAGCGGC- -5'
7292 5' -55.2 NC_001900.1 + 26855 0.8 0.109112
Target:  5'- -cAGCAGGCGggGGGCUuuCUUCGUCu -3'
miRNA:   3'- gcUCGUCCGCuuCCUGAu-GAAGCGGc -5'
7292 5' -55.2 NC_001900.1 + 12166 1.1 0.000828
Target:  5'- cCGAGCAGGCGAAGGACUACUUCGCCGa -3'
miRNA:   3'- -GCUCGUCCGCUUCCUGAUGAAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.