miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7293 3' -53.4 NC_001900.1 + 11106 0.66 0.797467
Target:  5'- gGCCCCGaguaccuuuCGgcGGAUaGCGGgGGUCUUCa -3'
miRNA:   3'- gCGGGGU---------GU--UCUAgCGCUgCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 8712 0.66 0.797467
Target:  5'- uGCCCCGCGAGuUCGUgGACGcugCa-- -3'
miRNA:   3'- gCGGGGUGUUCuAGCG-CUGCua-Gaag -5'
7293 3' -53.4 NC_001900.1 + 44174 0.66 0.787524
Target:  5'- aGUUCCACAGGGucgaggaaggcaUCGCGccuCGAUgUUCg -3'
miRNA:   3'- gCGGGGUGUUCU------------AGCGCu--GCUAgAAG- -5'
7293 3' -53.4 NC_001900.1 + 4557 0.66 0.777413
Target:  5'- aGCCCCACAAGGgaacUGgGugGGUgcUCc -3'
miRNA:   3'- gCGGGGUGUUCUa---GCgCugCUAgaAG- -5'
7293 3' -53.4 NC_001900.1 + 24151 0.66 0.767145
Target:  5'- uCGCCgCGCcAGuacugCGCGACGGUCc-- -3'
miRNA:   3'- -GCGGgGUGuUCua---GCGCUGCUAGaag -5'
7293 3' -53.4 NC_001900.1 + 4638 0.67 0.756734
Target:  5'- aGUCCCuGCGGGAuUCGaacccGCGAUCUUCu -3'
miRNA:   3'- gCGGGG-UGUUCU-AGCgc---UGCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 11231 0.67 0.74619
Target:  5'- aGCCUCGuuccaGAGGUCGCcACGGUCUc- -3'
miRNA:   3'- gCGGGGUg----UUCUAGCGcUGCUAGAag -5'
7293 3' -53.4 NC_001900.1 + 15412 0.67 0.74619
Target:  5'- aCG-CCCACAAGGccgguguccgUCGCGACGAc---- -3'
miRNA:   3'- -GCgGGGUGUUCU----------AGCGCUGCUagaag -5'
7293 3' -53.4 NC_001900.1 + 43687 0.67 0.713888
Target:  5'- gCGCCgCAUGAGAcgGCGGCGGUCc-- -3'
miRNA:   3'- -GCGGgGUGUUCUagCGCUGCUAGaag -5'
7293 3' -53.4 NC_001900.1 + 23703 0.67 0.702938
Target:  5'- uGCUCCugGGGAgcCGgGACcAUCUUCa -3'
miRNA:   3'- gCGGGGugUUCUa-GCgCUGcUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 37478 0.67 0.701839
Target:  5'- aGCCCgACGAGGUCGUccacaucGGCGAcCUg- -3'
miRNA:   3'- gCGGGgUGUUCUAGCG-------CUGCUaGAag -5'
7293 3' -53.4 NC_001900.1 + 9152 0.67 0.699638
Target:  5'- uCGCCCCgaacGCGAGGacagcgcagacugcaGCGuCGAUCUUCu -3'
miRNA:   3'- -GCGGGG----UGUUCUag-------------CGCuGCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 15214 0.68 0.691916
Target:  5'- aGCUCCGCGAGAUCaccacCGAgGAUCcgaUCg -3'
miRNA:   3'- gCGGGGUGUUCUAGc----GCUgCUAGa--AG- -5'
7293 3' -53.4 NC_001900.1 + 38532 0.68 0.669704
Target:  5'- aGCUgUGCGGGAUCcCGACGGUCggCg -3'
miRNA:   3'- gCGGgGUGUUCUAGcGCUGCUAGaaG- -5'
7293 3' -53.4 NC_001900.1 + 3949 0.68 0.669704
Target:  5'- cCGCCuCCACGGcGAaCGCGGcCGGUCUc- -3'
miRNA:   3'- -GCGG-GGUGUU-CUaGCGCU-GCUAGAag -5'
7293 3' -53.4 NC_001900.1 + 30292 0.68 0.657419
Target:  5'- aCGCCuCCGCGAcauccucGGUCGCGuuGAcCUUCu -3'
miRNA:   3'- -GCGG-GGUGUU-------CUAGCGCugCUaGAAG- -5'
7293 3' -53.4 NC_001900.1 + 15911 0.68 0.647345
Target:  5'- uCGCUCCGCAuuugcgAGAUCGuCGccaaGGUCUUCc -3'
miRNA:   3'- -GCGGGGUGU------UCUAGC-GCug--CUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 12441 0.69 0.636138
Target:  5'- cCGCagacgCCACgAAGAUCGUcGCGAUCUUg -3'
miRNA:   3'- -GCGg----GGUG-UUCUAGCGcUGCUAGAAg -5'
7293 3' -53.4 NC_001900.1 + 28091 0.69 0.591376
Target:  5'- aGCa--GCAGGAcUGCGAUGGUCUUCa -3'
miRNA:   3'- gCGgggUGUUCUaGCGCUGCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 16295 0.7 0.580251
Target:  5'- aCGCUCCGCGuAGAaCGCGcCuGUCUUCg -3'
miRNA:   3'- -GCGGGGUGU-UCUaGCGCuGcUAGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.