miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7293 3' -53.4 NC_001900.1 + 25735 0.72 0.462512
Target:  5'- cCGCCUCAC---GUCGCGGCGAUgaUCc -3'
miRNA:   3'- -GCGGGGUGuucUAGCGCUGCUAgaAG- -5'
7293 3' -53.4 NC_001900.1 + 27124 0.75 0.286457
Target:  5'- aGCCUCACGGGcucAUCGCGAUGGUgaUCg -3'
miRNA:   3'- gCGGGGUGUUC---UAGCGCUGCUAgaAG- -5'
7293 3' -53.4 NC_001900.1 + 28091 0.69 0.591376
Target:  5'- aGCa--GCAGGAcUGCGAUGGUCUUCa -3'
miRNA:   3'- gCGgggUGUUCUaGCGCUGCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 29419 0.71 0.500902
Target:  5'- gCGCCCCaguuggccuucucaGCGGGcagagaCGCGACGAUCUcgUCg -3'
miRNA:   3'- -GCGGGG--------------UGUUCua----GCGCUGCUAGA--AG- -5'
7293 3' -53.4 NC_001900.1 + 30292 0.68 0.657419
Target:  5'- aCGCCuCCGCGAcauccucGGUCGCGuuGAcCUUCu -3'
miRNA:   3'- -GCGG-GGUGUU-------CUAGCGCugCUaGAAG- -5'
7293 3' -53.4 NC_001900.1 + 36748 0.71 0.472739
Target:  5'- aGCUCCAgCGAGGUcCGUGA-GGUCUUCg -3'
miRNA:   3'- gCGGGGU-GUUCUA-GCGCUgCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 37478 0.67 0.701839
Target:  5'- aGCCCgACGAGGUCGUccacaucGGCGAcCUg- -3'
miRNA:   3'- gCGGGgUGUUCUAGCG-------CUGCUaGAag -5'
7293 3' -53.4 NC_001900.1 + 38532 0.68 0.669704
Target:  5'- aGCUgUGCGGGAUCcCGACGGUCggCg -3'
miRNA:   3'- gCGGgGUGUUCUAGcGCUGCUAGaaG- -5'
7293 3' -53.4 NC_001900.1 + 43420 0.78 0.187198
Target:  5'- aGCCCCAuCAGGAUCGCcAgGAUCUUg -3'
miRNA:   3'- gCGGGGU-GUUCUAGCGcUgCUAGAAg -5'
7293 3' -53.4 NC_001900.1 + 43687 0.67 0.713888
Target:  5'- gCGCCgCAUGAGAcgGCGGCGGUCc-- -3'
miRNA:   3'- -GCGGgGUGUUCUagCGCUGCUAGaag -5'
7293 3' -53.4 NC_001900.1 + 44174 0.66 0.787524
Target:  5'- aGUUCCACAGGGucgaggaaggcaUCGCGccuCGAUgUUCg -3'
miRNA:   3'- gCGGGGUGUUCU------------AGCGCu--GCUAgAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.