miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7293 3' -53.4 NC_001900.1 + 11106 0.66 0.797467
Target:  5'- gGCCCCGaguaccuuuCGgcGGAUaGCGGgGGUCUUCa -3'
miRNA:   3'- gCGGGGU---------GU--UCUAgCGCUgCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 9164 0.72 0.439442
Target:  5'- aGCCCCGCuccccggacaggagGAGAUCGCugauccGGCGAUCg-- -3'
miRNA:   3'- gCGGGGUG--------------UUCUAGCG------CUGCUAGaag -5'
7293 3' -53.4 NC_001900.1 + 9152 0.67 0.699638
Target:  5'- uCGCCCCgaacGCGAGGacagcgcagacugcaGCGuCGAUCUUCu -3'
miRNA:   3'- -GCGGGG----UGUUCUag-------------CGCuGCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 8712 0.66 0.797467
Target:  5'- uGCCCCGCGAGuUCGUgGACGcugCa-- -3'
miRNA:   3'- gCGGGGUGUUCuAGCG-CUGCua-Gaag -5'
7293 3' -53.4 NC_001900.1 + 7823 0.7 0.558143
Target:  5'- gCGCCCCGCAgcguGGAucaccgUCGCGGCcGUCa-- -3'
miRNA:   3'- -GCGGGGUGU----UCU------AGCGCUGcUAGaag -5'
7293 3' -53.4 NC_001900.1 + 5762 0.7 0.53628
Target:  5'- gCGCgugaCCGuuuCGAGGUCGCGGCGGUCg-- -3'
miRNA:   3'- -GCGg---GGU---GUUCUAGCGCUGCUAGaag -5'
7293 3' -53.4 NC_001900.1 + 4998 0.71 0.504077
Target:  5'- uCGCCUgAaccCGAGGUCGUaGACGAUCUUg -3'
miRNA:   3'- -GCGGGgU---GUUCUAGCG-CUGCUAGAAg -5'
7293 3' -53.4 NC_001900.1 + 4638 0.67 0.756734
Target:  5'- aGUCCCuGCGGGAuUCGaacccGCGAUCUUCu -3'
miRNA:   3'- gCGGGG-UGUUCU-AGCgc---UGCUAGAAG- -5'
7293 3' -53.4 NC_001900.1 + 4557 0.66 0.777413
Target:  5'- aGCCCCACAAGGgaacUGgGugGGUgcUCc -3'
miRNA:   3'- gCGGGGUGUUCUa---GCgCugCUAgaAG- -5'
7293 3' -53.4 NC_001900.1 + 3949 0.68 0.669704
Target:  5'- cCGCCuCCACGGcGAaCGCGGcCGGUCUc- -3'
miRNA:   3'- -GCGG-GGUGUU-CUaGCGCU-GCUAGAag -5'
7293 3' -53.4 NC_001900.1 + 2696 0.71 0.504077
Target:  5'- gGCCCCAUcGGAaagCGCGACGAa---- -3'
miRNA:   3'- gCGGGGUGuUCUa--GCGCUGCUagaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.