Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 7293 | 5' | -59.7 | NC_001900.1 | + | 33033 | 0.66 | 0.463208 |
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Target: 5'- uGCGGAGcCCGagaCUGgugcUGCUGGCCaCCGCc -3' miRNA: 3'- -CGCCUCuGGCa--GGC----ACGGUUGG-GGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 41948 | 0.66 | 0.463208 |
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Target: 5'- cGUGGAGACguugagcgaGUCCGgGCCGAagCCGUc -3' miRNA: 3'- -CGCCUCUGg--------CAGGCaCGGUUggGGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 38247 | 0.66 | 0.463208 |
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Target: 5'- -gGGuuGCCGcCCGUGCCAccggAUCCaGCa -3' miRNA: 3'- cgCCucUGGCaGGCACGGU----UGGGgCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 3634 | 0.66 | 0.482714 |
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Target: 5'- aGC-GAGACCGgaugcaccaggCCGUuaCCGGCCCCGa -3' miRNA: 3'- -CGcCUCUGGCa----------GGCAc-GGUUGGGGCg -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 10322 | 0.66 | 0.482714 |
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Target: 5'- aUGGAGACgGUCUG-GCgUGACCCgaGCa -3' miRNA: 3'- cGCCUCUGgCAGGCaCG-GUUGGGg-CG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 44702 | 0.66 | 0.492614 |
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Target: 5'- uGCGGcagccAGGCCGcuggCCGcUGCCAcACCuuGUc -3' miRNA: 3'- -CGCC-----UCUGGCa---GGC-ACGGU-UGGggCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 24672 | 0.66 | 0.502607 |
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Target: 5'- gGCGGAGcccauGCCuuGUCCaccaccGCCAGCUCCGa -3' miRNA: 3'- -CGCCUC-----UGG--CAGGca----CGGUUGGGGCg -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 26032 | 0.65 | 0.511675 |
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Target: 5'- uCGGAGAac--CCGUGCCGgaucgagcagaagGCaCCCGCu -3' miRNA: 3'- cGCCUCUggcaGGCACGGU-------------UG-GGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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