Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 7293 | 5' | -59.7 | NC_001900.1 | + | 43227 | 0.69 | 0.316602 |
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Target: 5'- gGUGGAGGucgUgGUCCGgGCCAGCCCaGUc -3' miRNA: 3'- -CGCCUCU---GgCAGGCaCGGUUGGGgCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 625 | 0.69 | 0.309151 |
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Target: 5'- --cGAGACCGUCUG-GUCGAgCCCGg -3' miRNA: 3'- cgcCUCUGGCAGGCaCGGUUgGGGCg -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 9850 | 0.69 | 0.309151 |
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Target: 5'- aGCGGGaccACCGggaCCGcGCCGAgCCCGUg -3' miRNA: 3'- -CGCCUc--UGGCa--GGCaCGGUUgGGGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 30520 | 0.7 | 0.301836 |
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Target: 5'- uGCaGAuccgGGCCGUgaagaCCGUGuCCAuCCCCGCg -3' miRNA: 3'- -CGcCU----CUGGCA-----GGCAC-GGUuGGGGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 510 | 0.7 | 0.301836 |
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Target: 5'- uGCGGccGACaaccuaCGuUCCG-GCCAACCUCGCg -3' miRNA: 3'- -CGCCu-CUG------GC-AGGCaCGGUUGGGGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 9018 | 0.71 | 0.254354 |
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Target: 5'- -gGGuuGCCGU-CGUGCCAGaCCUCGCc -3' miRNA: 3'- cgCCucUGGCAgGCACGGUU-GGGGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 9144 | 0.84 | 0.027862 |
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Target: 5'- gGUGGuGGCCGUCCGaUGaCAGCCCCGCu -3' miRNA: 3'- -CGCCuCUGGCAGGC-ACgGUUGGGGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 12389 | 1.12 | 0.000254 |
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Target: 5'- uGCGGAGACCGUCCGUGCCAACCCCGCc -3' miRNA: 3'- -CGCCUCUGGCAGGCACGGUUGGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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