Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7293 | 5' | -59.7 | NC_001900.1 | + | 30054 | 0.67 | 0.416348 |
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Target: 5'- cUGGAcgGugCGUCgGUGCUuccucgcuGACCCCGg -3' miRNA: 3'- cGCCU--CugGCAGgCACGG--------UUGGGGCg -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 22096 | 0.67 | 0.42549 |
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Target: 5'- cGUGGAuguuGCCGUCCucaucaGCCAGCuCCCGg -3' miRNA: 3'- -CGCCUc---UGGCAGGca----CGGUUG-GGGCg -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 34463 | 0.67 | 0.433818 |
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Target: 5'- uGUGGAGagaucacGCUGgagCCGUGggAGCCCUGCa -3' miRNA: 3'- -CGCCUC-------UGGCa--GGCACggUUGGGGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 6444 | 0.67 | 0.444124 |
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Target: 5'- cGgGGAGGUgGUCagCGUGCCAuCCuuGCg -3' miRNA: 3'- -CgCCUCUGgCAG--GCACGGUuGGggCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 28290 | 0.67 | 0.453612 |
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Target: 5'- --cGAGGCCGUCCGcaaggacgagGCCAACgacaUCGCa -3' miRNA: 3'- cgcCUCUGGCAGGCa---------CGGUUGg---GGCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 38247 | 0.66 | 0.463208 |
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Target: 5'- -gGGuuGCCGcCCGUGCCAccggAUCCaGCa -3' miRNA: 3'- cgCCucUGGCaGGCACGGU----UGGGgCG- -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 3634 | 0.66 | 0.482714 |
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Target: 5'- aGC-GAGACCGgaugcaccaggCCGUuaCCGGCCCCGa -3' miRNA: 3'- -CGcCUCUGGCa----------GGCAc-GGUUGGGGCg -5' |
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| 7293 | 5' | -59.7 | NC_001900.1 | + | 24672 | 0.66 | 0.502607 |
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Target: 5'- gGCGGAGcccauGCCuuGUCCaccaccGCCAGCUCCGa -3' miRNA: 3'- -CGCCUC-----UGG--CAGGca----CGGUUGGGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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