miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7295 3' -55.8 NC_001900.1 + 32080 0.66 0.707585
Target:  5'- gCGAGCCGAUCCUcGACaccCaaGAGGGu -3'
miRNA:   3'- -GCUCGGCUAGGAcUUGcc-GcgCUUCC- -5'
7295 3' -55.8 NC_001900.1 + 5093 0.66 0.707585
Target:  5'- aCGAGgCGucgacugggaGUCCcGAggagaagucaACGGCGUGggGGu -3'
miRNA:   3'- -GCUCgGC----------UAGGaCU----------UGCCGCGCuuCC- -5'
7295 3' -55.8 NC_001900.1 + 1140 0.66 0.707585
Target:  5'- gGAGCCGGggca-GGCGGCGUGGGuGGa -3'
miRNA:   3'- gCUCGGCUaggacUUGCCGCGCUU-CC- -5'
7295 3' -55.8 NC_001900.1 + 4438 0.66 0.696885
Target:  5'- gGAGUCGAaCCUGGAacCGGCGgcuuUGGAGa -3'
miRNA:   3'- gCUCGGCUaGGACUU--GCCGC----GCUUCc -5'
7295 3' -55.8 NC_001900.1 + 18170 0.66 0.67531
Target:  5'- uGGGUCGGcUCCUGGuccaGCGGUGUGcagcAGGu -3'
miRNA:   3'- gCUCGGCU-AGGACU----UGCCGCGCu---UCC- -5'
7295 3' -55.8 NC_001900.1 + 7935 0.66 0.661195
Target:  5'- gCGAGaacguguucuucguCUGGUCCUGGcugACGGCcGCGAcGGu -3'
miRNA:   3'- -GCUC--------------GGCUAGGACU---UGCCG-CGCUuCC- -5'
7295 3' -55.8 NC_001900.1 + 1510 0.67 0.653575
Target:  5'- aCGAcGCCauguccaaGAUCCUGAGCcaGGCGC--AGGu -3'
miRNA:   3'- -GCU-CGG--------CUAGGACUUG--CCGCGcuUCC- -5'
7295 3' -55.8 NC_001900.1 + 41968 0.68 0.577394
Target:  5'- cCGGGCCGAagccgUCCgacucgcGAugGaGCGUGAGGa -3'
miRNA:   3'- -GCUCGGCU-----AGGa------CUugC-CGCGCUUCc -5'
7295 3' -55.8 NC_001900.1 + 357 0.68 0.534641
Target:  5'- aGcGCCGcgCCUGAagcGCGGCuuauUGAAGGg -3'
miRNA:   3'- gCuCGGCuaGGACU---UGCCGc---GCUUCC- -5'
7295 3' -55.8 NC_001900.1 + 6772 0.68 0.533586
Target:  5'- cCGAGCUGAUCCUGcagaucgagcugaAGCuGGaCGCGGAc- -3'
miRNA:   3'- -GCUCGGCUAGGAC-------------UUG-CC-GCGCUUcc -5'
7295 3' -55.8 NC_001900.1 + 3069 0.69 0.52412
Target:  5'- --cGCCGA-CCcGAcCGGCGgGAAGGu -3'
miRNA:   3'- gcuCGGCUaGGaCUuGCCGCgCUUCC- -5'
7295 3' -55.8 NC_001900.1 + 10221 0.69 0.513678
Target:  5'- uCGAGCggaagaacgCGAUCUUcGGCGGUGCGuGGGa -3'
miRNA:   3'- -GCUCG---------GCUAGGAcUUGCCGCGCuUCC- -5'
7295 3' -55.8 NC_001900.1 + 39133 0.69 0.503322
Target:  5'- ---cCCGAUgaCCUGGACGGC-CGggGGc -3'
miRNA:   3'- gcucGGCUA--GGACUUGCCGcGCuuCC- -5'
7295 3' -55.8 NC_001900.1 + 7093 0.7 0.46684
Target:  5'- uCGAGCCGGUCCUcgaGGAUuccgagggugucaggGGCaGCGAccGGGu -3'
miRNA:   3'- -GCUCGGCUAGGA---CUUG---------------CCG-CGCU--UCC- -5'
7295 3' -55.8 NC_001900.1 + 34894 0.7 0.46287
Target:  5'- cCGAGgucuCCGAgaUCCUGAGcCGGUgugcccGCGAAGGc -3'
miRNA:   3'- -GCUC----GGCU--AGGACUU-GCCG------CGCUUCC- -5'
7295 3' -55.8 NC_001900.1 + 325 0.7 0.46287
Target:  5'- gCGAGCCG--CCUGaAGCGGCucuuaGGAGGg -3'
miRNA:   3'- -GCUCGGCuaGGAC-UUGCCGcg---CUUCC- -5'
7295 3' -55.8 NC_001900.1 + 16766 0.7 0.424189
Target:  5'- uGAGCCG--CCUGcuCGGCGguaaGAAGGg -3'
miRNA:   3'- gCUCGGCuaGGACuuGCCGCg---CUUCC- -5'
7295 3' -55.8 NC_001900.1 + 5491 0.72 0.336542
Target:  5'- aGGGCCGGUCCUGGaucaugaucACGG-GC-AAGGa -3'
miRNA:   3'- gCUCGGCUAGGACU---------UGCCgCGcUUCC- -5'
7295 3' -55.8 NC_001900.1 + 5957 0.77 0.168218
Target:  5'- uGAGCUGAUCaaGAACGGCGaCGGcauGGGg -3'
miRNA:   3'- gCUCGGCUAGgaCUUGCCGC-GCU---UCC- -5'
7295 3' -55.8 NC_001900.1 + 12655 1.11 0.000657
Target:  5'- cCGAGCCGAUCCUGAACGGCGCGAAGGa -3'
miRNA:   3'- -GCUCGGCUAGGACUUGCCGCGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.