miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7297 5' -53.4 NC_001900.1 + 25459 0.66 0.772735
Target:  5'- uGGUCgUCGCACCG----GCCUGAGCCg -3'
miRNA:   3'- uUCGG-AGCGUGGUgguuUGGGUUUGG- -5'
7297 5' -53.4 NC_001900.1 + 46128 0.66 0.772735
Target:  5'- --aCCUC-CAUCGCCGAGCuggucgaugaCCAGGCCg -3'
miRNA:   3'- uucGGAGcGUGGUGGUUUG----------GGUUUGG- -5'
7297 5' -53.4 NC_001900.1 + 17244 0.66 0.76224
Target:  5'- -cGCaCUgGCGaguucuUCACCGGGCUCGGGCCg -3'
miRNA:   3'- uuCG-GAgCGU------GGUGGUUUGGGUUUGG- -5'
7297 5' -53.4 NC_001900.1 + 429 0.66 0.751603
Target:  5'- uAAGCCgcgcuucaggCGCGgCGCUAGAUCCGGcgguuGCCg -3'
miRNA:   3'- -UUCGGa---------GCGUgGUGGUUUGGGUU-----UGG- -5'
7297 5' -53.4 NC_001900.1 + 8948 0.66 0.751603
Target:  5'- gAGGUCUgGCACgACgGcAACCCGGugCu -3'
miRNA:   3'- -UUCGGAgCGUGgUGgU-UUGGGUUugG- -5'
7297 5' -53.4 NC_001900.1 + 36215 0.66 0.751603
Target:  5'- -cGCCgUCGUcgUACCGAACCCuGAUCg -3'
miRNA:   3'- uuCGG-AGCGugGUGGUUUGGGuUUGG- -5'
7297 5' -53.4 NC_001900.1 + 13794 0.66 0.751603
Target:  5'- -cGUCUCuCGCCA----GCCCAAGCCg -3'
miRNA:   3'- uuCGGAGcGUGGUgguuUGGGUUUGG- -5'
7297 5' -53.4 NC_001900.1 + 14280 0.66 0.751603
Target:  5'- cGGCgUCaC-CCGCCGuGCUCGAACCa -3'
miRNA:   3'- uUCGgAGcGuGGUGGUuUGGGUUUGG- -5'
7297 5' -53.4 NC_001900.1 + 39499 0.66 0.751603
Target:  5'- -cGCCaCGCACCACCGGGagUUCAAGgCu -3'
miRNA:   3'- uuCGGaGCGUGGUGGUUU--GGGUUUgG- -5'
7297 5' -53.4 NC_001900.1 + 33785 0.66 0.740836
Target:  5'- cGGCCgaacCGUGCgGCCAcGGCCUcGACCa -3'
miRNA:   3'- uUCGGa---GCGUGgUGGU-UUGGGuUUGG- -5'
7297 5' -53.4 NC_001900.1 + 36183 0.66 0.740836
Target:  5'- -cGCCUCG-GCaGCCGAACCCcucuCCg -3'
miRNA:   3'- uuCGGAGCgUGgUGGUUUGGGuuu-GG- -5'
7297 5' -53.4 NC_001900.1 + 32487 0.66 0.740836
Target:  5'- -cGCUgCGaCACCACCGAgaaGCUCAGguGCCu -3'
miRNA:   3'- uuCGGaGC-GUGGUGGUU---UGGGUU--UGG- -5'
7297 5' -53.4 NC_001900.1 + 2946 0.66 0.729952
Target:  5'- cGGCCaaGCACCAgggCAAGCCCAucgGugCg -3'
miRNA:   3'- uUCGGagCGUGGUg--GUUUGGGU---UugG- -5'
7297 5' -53.4 NC_001900.1 + 23891 0.66 0.729952
Target:  5'- gAAGCCa-GCGCCgauaGCCG-ACCgGAGCCc -3'
miRNA:   3'- -UUCGGagCGUGG----UGGUuUGGgUUUGG- -5'
7297 5' -53.4 NC_001900.1 + 44243 0.66 0.728857
Target:  5'- aGGGCaagGCACCgaagccgACCAAGCCCuacGACCu -3'
miRNA:   3'- -UUCGgagCGUGG-------UGGUUUGGGu--UUGG- -5'
7297 5' -53.4 NC_001900.1 + 41347 0.66 0.728857
Target:  5'- --cCCUUGacaGCCACCGAaaggaacACCCAgauGACCa -3'
miRNA:   3'- uucGGAGCg--UGGUGGUU-------UGGGU---UUGG- -5'
7297 5' -53.4 NC_001900.1 + 31215 0.67 0.718963
Target:  5'- cGGCCUCGguCgaACgGAACCCGuACUa -3'
miRNA:   3'- uUCGGAGCguGg-UGgUUUGGGUuUGG- -5'
7297 5' -53.4 NC_001900.1 + 4012 0.67 0.718963
Target:  5'- cGAGCCagGCaaggACCGCCuGACCaucuGGCCg -3'
miRNA:   3'- -UUCGGagCG----UGGUGGuUUGGgu--UUGG- -5'
7297 5' -53.4 NC_001900.1 + 44410 0.67 0.718963
Target:  5'- -cGCUggCGUACCGuCCGGggucACCCAGAUCu -3'
miRNA:   3'- uuCGGa-GCGUGGU-GGUU----UGGGUUUGG- -5'
7297 5' -53.4 NC_001900.1 + 5639 0.67 0.718963
Target:  5'- -cGCCUgGUACUggACCGucgagcGCCCAGACa -3'
miRNA:   3'- uuCGGAgCGUGG--UGGUu-----UGGGUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.