miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7298 3' -56.8 NC_001900.1 + 12070 0.66 0.585466
Target:  5'- --uUCAUGGCGUUGAggaucgggucaccgUUGAGCggcaguuccuGCCGAc -3'
miRNA:   3'- uucAGUACCGCGACU--------------AGCUCG----------CGGCU- -5'
7298 3' -56.8 NC_001900.1 + 3914 0.66 0.577744
Target:  5'- cGAGuUCGUcGGCgaGCUGGcCGAGaCGCCGGu -3'
miRNA:   3'- -UUC-AGUA-CCG--CGACUaGCUC-GCGGCU- -5'
7298 3' -56.8 NC_001900.1 + 34167 0.66 0.53414
Target:  5'- gGGGagAUGGcCGCUGAggucgacaGAGCGgCCGAg -3'
miRNA:   3'- -UUCagUACC-GCGACUag------CUCGC-GGCU- -5'
7298 3' -56.8 NC_001900.1 + 31308 0.67 0.471152
Target:  5'- --aUCGUGGCGUUG-UCG-GUGCCGc -3'
miRNA:   3'- uucAGUACCGCGACuAGCuCGCGGCu -5'
7298 3' -56.8 NC_001900.1 + 15094 0.68 0.43717
Target:  5'- -cGUCGaccUGGacuggagccaccgGCUGGUCGAGCGUCGGc -3'
miRNA:   3'- uuCAGU---ACCg------------CGACUAGCUCGCGGCU- -5'
7298 3' -56.8 NC_001900.1 + 23820 0.68 0.43132
Target:  5'- cGGUCGgcuaucGGCGCUGGcuUCcGGCGCUGGg -3'
miRNA:   3'- uUCAGUa-----CCGCGACU--AGcUCGCGGCU- -5'
7298 3' -56.8 NC_001900.1 + 29434 0.68 0.421672
Target:  5'- uGGGUCc-GGUGCUGAUCG-GCaCCGAc -3'
miRNA:   3'- -UUCAGuaCCGCGACUAGCuCGcGGCU- -5'
7298 3' -56.8 NC_001900.1 + 13403 0.69 0.412156
Target:  5'- cGAGUC--GGCGCUcGAUC-AGCGCCa- -3'
miRNA:   3'- -UUCAGuaCCGCGA-CUAGcUCGCGGcu -5'
7298 3' -56.8 NC_001900.1 + 35727 0.7 0.332785
Target:  5'- aGAGgcaCAUGGCGCUGGUUccggggcaagaaGGGCGUCGu -3'
miRNA:   3'- -UUCa--GUACCGCGACUAG------------CUCGCGGCu -5'
7298 3' -56.8 NC_001900.1 + 43928 0.72 0.258439
Target:  5'- -cGUCccGGUGCUGAgaUCGAGCGUCu- -3'
miRNA:   3'- uuCAGuaCCGCGACU--AGCUCGCGGcu -5'
7298 3' -56.8 NC_001900.1 + 22486 0.75 0.172972
Target:  5'- ---aCAUgaGGCGCUGAacaUCGAGCGCCGc -3'
miRNA:   3'- uucaGUA--CCGCGACU---AGCUCGCGGCu -5'
7298 3' -56.8 NC_001900.1 + 13325 1.06 0.000819
Target:  5'- gAAGUCAUGGCGCUGAUCGAGCGCCGAc -3'
miRNA:   3'- -UUCAGUACCGCGACUAGCUCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.