miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7299 5' -56 NC_001900.1 + 1230 0.66 0.674724
Target:  5'- aCCgGUGGUGUacucgGUGGCgGCGGcAGCGGAg -3'
miRNA:   3'- -GG-CGCUACA-----CGCUGgUGCU-UCGCCUa -5'
7299 5' -56 NC_001900.1 + 14030 0.66 0.652801
Target:  5'- aCCG-GAcUGguugGCGACCugGAAGCGu-- -3'
miRNA:   3'- -GGCgCU-ACa---CGCUGGugCUUCGCcua -5'
7299 5' -56 NC_001900.1 + 26946 0.66 0.652801
Target:  5'- -gGCGAgcUGUcaGCGGCCaACGGAGUGGc- -3'
miRNA:   3'- ggCGCU--ACA--CGCUGG-UGCUUCGCCua -5'
7299 5' -56 NC_001900.1 + 33225 0.67 0.596739
Target:  5'- uCCGUGAcgcUG-GCGuacuucggcaccaGCCACGgcGCGGAg -3'
miRNA:   3'- -GGCGCU---ACaCGC-------------UGGUGCuuCGCCUa -5'
7299 5' -56 NC_001900.1 + 20176 0.68 0.532908
Target:  5'- gUCGCgGGUGaGCGACUGCuGGAGUGGGa -3'
miRNA:   3'- -GGCG-CUACaCGCUGGUG-CUUCGCCUa -5'
7299 5' -56 NC_001900.1 + 26607 0.68 0.522311
Target:  5'- uCUGacccUGUGCGACCuuGAAGUGGAc -3'
miRNA:   3'- -GGCgcu-ACACGCUGGugCUUCGCCUa -5'
7299 5' -56 NC_001900.1 + 9894 0.68 0.511795
Target:  5'- aUGCuGAUGcagGCGACUGCGGAGCuGAUg -3'
miRNA:   3'- gGCG-CUACa--CGCUGGUGCUUCGcCUA- -5'
7299 5' -56 NC_001900.1 + 7900 0.68 0.501369
Target:  5'- gCCGCGAcG-GUGAuCCACGcuGCGGGg -3'
miRNA:   3'- -GGCGCUaCaCGCU-GGUGCuuCGCCUa -5'
7299 5' -56 NC_001900.1 + 18032 0.69 0.460659
Target:  5'- -aGCGAgcUGUGCGAUCGCGggGaucagcgucUGGAa -3'
miRNA:   3'- ggCGCU--ACACGCUGGUGCuuC---------GCCUa -5'
7299 5' -56 NC_001900.1 + 619 0.7 0.431305
Target:  5'- uUCGCGAUGUcGCGgcauguuccagGCCGCGAGGUuggccGGAa -3'
miRNA:   3'- -GGCGCUACA-CGC-----------UGGUGCUUCG-----CCUa -5'
7299 5' -56 NC_001900.1 + 31757 0.71 0.375165
Target:  5'- aCGcCGAUcUGCGgagucagcucgacACCGCGAGGCGGAc -3'
miRNA:   3'- gGC-GCUAcACGC-------------UGGUGCUUCGCCUa -5'
7299 5' -56 NC_001900.1 + 46528 0.73 0.260691
Target:  5'- gCCGCGugggacugcucacgGUGCGGCCAUGAGGCGcaGAg -3'
miRNA:   3'- -GGCGCua------------CACGCUGGUGCUUCGC--CUa -5'
7299 5' -56 NC_001900.1 + 16440 0.75 0.216702
Target:  5'- gCCGCGAUGguaGUGGCCGCGAAGaaGGc -3'
miRNA:   3'- -GGCGCUACa--CGCUGGUGCUUCgcCUa -5'
7299 5' -56 NC_001900.1 + 28435 0.75 0.200107
Target:  5'- uCCGUGGUGUGCGACCACu--GCuGGUa -3'
miRNA:   3'- -GGCGCUACACGCUGGUGcuuCGcCUA- -5'
7299 5' -56 NC_001900.1 + 13720 1.07 0.00112
Target:  5'- gCCGCGAUGUGCGACCACGAAGCGGAUc -3'
miRNA:   3'- -GGCGCUACACGCUGGUGCUUCGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.