Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 39818 | 0.66 | 0.732219 |
Target: 5'- aCUCaUGGAUGCuggCUGACCCGgAGCUGg -3' miRNA: 3'- -GGG-GCUUAUGuagGACUGGGC-UCGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 9475 | 0.66 | 0.732219 |
Target: 5'- gCCUCGucgGCGUC----CCCGAGCCGg -3' miRNA: 3'- -GGGGCuuaUGUAGgacuGGGCUCGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 1660 | 0.66 | 0.721676 |
Target: 5'- aCCUCGAAcagcgaggAgAUCC-GGCCCGAGUCc -3' miRNA: 3'- -GGGGCUUa-------UgUAGGaCUGGGCUCGGc -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 21063 | 0.66 | 0.721676 |
Target: 5'- aCCCgUGAAUACGUcgaccCCUucGACCUG-GCCGu -3' miRNA: 3'- -GGG-GCUUAUGUA-----GGA--CUGGGCuCGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 9565 | 0.66 | 0.721675 |
Target: 5'- aUCCGA--ACGUCCcgcUGAUCCGGGUgGa -3' miRNA: 3'- gGGGCUuaUGUAGG---ACUGGGCUCGgC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 28953 | 0.66 | 0.711044 |
Target: 5'- cUCCCGAcgGCAaggUgCUGACCCacaAGUCGu -3' miRNA: 3'- -GGGGCUuaUGU---AgGACUGGGc--UCGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 32183 | 0.66 | 0.711044 |
Target: 5'- uUCCCGGAUuucgGCAUCCgcGGCCUcauGCCa -3' miRNA: 3'- -GGGGCUUA----UGUAGGa-CUGGGcu-CGGc -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 10008 | 0.66 | 0.711044 |
Target: 5'- aCCUCGcccGCAUCCUGGCguUCGAggacGCCGa -3' miRNA: 3'- -GGGGCuuaUGUAGGACUG--GGCU----CGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 29075 | 0.66 | 0.70784 |
Target: 5'- uCCCCGAAggucgGCcUCCcGGCuucuacuucgaguuCCGGGCCa -3' miRNA: 3'- -GGGGCUUa----UGuAGGaCUG--------------GGCUCGGc -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 32262 | 0.66 | 0.70141 |
Target: 5'- aCCaucggCGAGUugGUCauguucggcagaacGGCCCGAGCCGc -3' miRNA: 3'- -GGg----GCUUAugUAGga------------CUGGGCUCGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 38091 | 0.66 | 0.689563 |
Target: 5'- gUCCUGGacGUACGUCUUGGCCUcGGCg- -3' miRNA: 3'- -GGGGCU--UAUGUAGGACUGGGcUCGgc -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 2307 | 0.66 | 0.678736 |
Target: 5'- aCCCGAGUACucaaggaucUCCaGGCCCucccAGCCa -3' miRNA: 3'- gGGGCUUAUGu--------AGGaCUGGGc---UCGGc -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 10708 | 0.66 | 0.678736 |
Target: 5'- gCCCCGcAGUG-AUCaC-GGCCUGGGCCGc -3' miRNA: 3'- -GGGGC-UUAUgUAG-GaCUGGGCUCGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 13455 | 0.66 | 0.678736 |
Target: 5'- aCCCUG---GCGUCCagaucuggGAUCCGAcGCCGg -3' miRNA: 3'- -GGGGCuuaUGUAGGa-------CUGGGCU-CGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 18349 | 0.66 | 0.678736 |
Target: 5'- aCCCUGGAcgACGUUCUuGCCCGccucgaucAGCCa -3' miRNA: 3'- -GGGGCUUa-UGUAGGAcUGGGC--------UCGGc -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 38120 | 0.66 | 0.678736 |
Target: 5'- uUCCGGu--CAUCgUGACCgaccauuuCGAGCCGa -3' miRNA: 3'- gGGGCUuauGUAGgACUGG--------GCUCGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 6224 | 0.66 | 0.678735 |
Target: 5'- uCCCCGGcauccuggGCAUcgcCCUGAUCUGGGgCGg -3' miRNA: 3'- -GGGGCUua------UGUA---GGACUGGGCUCgGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 6641 | 0.67 | 0.646031 |
Target: 5'- gCCCGAuccccuCGggCCUGGCCUGccuGCCGa -3' miRNA: 3'- gGGGCUuau---GUa-GGACUGGGCu--CGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 37381 | 0.67 | 0.642751 |
Target: 5'- gCCCGAuucggaGCAggccaagacgagguUCCUGGCCCcgcugcGGGCCGu -3' miRNA: 3'- gGGGCUua----UGU--------------AGGACUGGG------CUCGGC- -5' |
|||||||
7300 | 3' | -55.4 | NC_001900.1 | + | 8651 | 0.67 | 0.635092 |
Target: 5'- aCCCGAGggugAUcUUCUGGCCCcgguccagcgGAGCCa -3' miRNA: 3'- gGGGCUUa---UGuAGGACUGGG----------CUCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home