miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7300 3' -55.4 NC_001900.1 + 39818 0.66 0.732219
Target:  5'- aCUCaUGGAUGCuggCUGACCCGgAGCUGg -3'
miRNA:   3'- -GGG-GCUUAUGuagGACUGGGC-UCGGC- -5'
7300 3' -55.4 NC_001900.1 + 9475 0.66 0.732219
Target:  5'- gCCUCGucgGCGUC----CCCGAGCCGg -3'
miRNA:   3'- -GGGGCuuaUGUAGgacuGGGCUCGGC- -5'
7300 3' -55.4 NC_001900.1 + 1660 0.66 0.721676
Target:  5'- aCCUCGAAcagcgaggAgAUCC-GGCCCGAGUCc -3'
miRNA:   3'- -GGGGCUUa-------UgUAGGaCUGGGCUCGGc -5'
7300 3' -55.4 NC_001900.1 + 21063 0.66 0.721676
Target:  5'- aCCCgUGAAUACGUcgaccCCUucGACCUG-GCCGu -3'
miRNA:   3'- -GGG-GCUUAUGUA-----GGA--CUGGGCuCGGC- -5'
7300 3' -55.4 NC_001900.1 + 9565 0.66 0.721675
Target:  5'- aUCCGA--ACGUCCcgcUGAUCCGGGUgGa -3'
miRNA:   3'- gGGGCUuaUGUAGG---ACUGGGCUCGgC- -5'
7300 3' -55.4 NC_001900.1 + 28953 0.66 0.711044
Target:  5'- cUCCCGAcgGCAaggUgCUGACCCacaAGUCGu -3'
miRNA:   3'- -GGGGCUuaUGU---AgGACUGGGc--UCGGC- -5'
7300 3' -55.4 NC_001900.1 + 32183 0.66 0.711044
Target:  5'- uUCCCGGAUuucgGCAUCCgcGGCCUcauGCCa -3'
miRNA:   3'- -GGGGCUUA----UGUAGGa-CUGGGcu-CGGc -5'
7300 3' -55.4 NC_001900.1 + 10008 0.66 0.711044
Target:  5'- aCCUCGcccGCAUCCUGGCguUCGAggacGCCGa -3'
miRNA:   3'- -GGGGCuuaUGUAGGACUG--GGCU----CGGC- -5'
7300 3' -55.4 NC_001900.1 + 29075 0.66 0.70784
Target:  5'- uCCCCGAAggucgGCcUCCcGGCuucuacuucgaguuCCGGGCCa -3'
miRNA:   3'- -GGGGCUUa----UGuAGGaCUG--------------GGCUCGGc -5'
7300 3' -55.4 NC_001900.1 + 32262 0.66 0.70141
Target:  5'- aCCaucggCGAGUugGUCauguucggcagaacGGCCCGAGCCGc -3'
miRNA:   3'- -GGg----GCUUAugUAGga------------CUGGGCUCGGC- -5'
7300 3' -55.4 NC_001900.1 + 38091 0.66 0.689563
Target:  5'- gUCCUGGacGUACGUCUUGGCCUcGGCg- -3'
miRNA:   3'- -GGGGCU--UAUGUAGGACUGGGcUCGgc -5'
7300 3' -55.4 NC_001900.1 + 2307 0.66 0.678736
Target:  5'- aCCCGAGUACucaaggaucUCCaGGCCCucccAGCCa -3'
miRNA:   3'- gGGGCUUAUGu--------AGGaCUGGGc---UCGGc -5'
7300 3' -55.4 NC_001900.1 + 10708 0.66 0.678736
Target:  5'- gCCCCGcAGUG-AUCaC-GGCCUGGGCCGc -3'
miRNA:   3'- -GGGGC-UUAUgUAG-GaCUGGGCUCGGC- -5'
7300 3' -55.4 NC_001900.1 + 13455 0.66 0.678736
Target:  5'- aCCCUG---GCGUCCagaucuggGAUCCGAcGCCGg -3'
miRNA:   3'- -GGGGCuuaUGUAGGa-------CUGGGCU-CGGC- -5'
7300 3' -55.4 NC_001900.1 + 18349 0.66 0.678736
Target:  5'- aCCCUGGAcgACGUUCUuGCCCGccucgaucAGCCa -3'
miRNA:   3'- -GGGGCUUa-UGUAGGAcUGGGC--------UCGGc -5'
7300 3' -55.4 NC_001900.1 + 38120 0.66 0.678736
Target:  5'- uUCCGGu--CAUCgUGACCgaccauuuCGAGCCGa -3'
miRNA:   3'- gGGGCUuauGUAGgACUGG--------GCUCGGC- -5'
7300 3' -55.4 NC_001900.1 + 6224 0.66 0.678735
Target:  5'- uCCCCGGcauccuggGCAUcgcCCUGAUCUGGGgCGg -3'
miRNA:   3'- -GGGGCUua------UGUA---GGACUGGGCUCgGC- -5'
7300 3' -55.4 NC_001900.1 + 6641 0.67 0.646031
Target:  5'- gCCCGAuccccuCGggCCUGGCCUGccuGCCGa -3'
miRNA:   3'- gGGGCUuau---GUa-GGACUGGGCu--CGGC- -5'
7300 3' -55.4 NC_001900.1 + 37381 0.67 0.642751
Target:  5'- gCCCGAuucggaGCAggccaagacgagguUCCUGGCCCcgcugcGGGCCGu -3'
miRNA:   3'- gGGGCUua----UGU--------------AGGACUGGG------CUCGGC- -5'
7300 3' -55.4 NC_001900.1 + 8651 0.67 0.635092
Target:  5'- aCCCGAGggugAUcUUCUGGCCCcgguccagcgGAGCCa -3'
miRNA:   3'- gGGGCUUa---UGuAGGACUGGG----------CUCGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.