miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7301 5' -55.1 NC_001900.1 + 43833 0.66 0.714143
Target:  5'- cGCuUCuGGCG---UCGGGAACGgCCAGCg -3'
miRNA:   3'- -CGuAG-CCGCccuAGUCCUUGC-GGUUG- -5'
7301 5' -55.1 NC_001900.1 + 33134 0.66 0.692362
Target:  5'- gGUggCGGCGGuagcggCGGcGGugGCCAGCa -3'
miRNA:   3'- -CGuaGCCGCCcua---GUC-CUugCGGUUG- -5'
7301 5' -55.1 NC_001900.1 + 1262 0.66 0.692362
Target:  5'- aGCuggCGGCGGGuUCGGuGGuuCGaCCGGCa -3'
miRNA:   3'- -CGua-GCCGCCCuAGUC-CUu-GC-GGUUG- -5'
7301 5' -55.1 NC_001900.1 + 6827 0.66 0.692362
Target:  5'- cGCGaUGGCGGGuuacucgCAGGGA-GCCAu- -3'
miRNA:   3'- -CGUaGCCGCCCua-----GUCCUUgCGGUug -5'
7301 5' -55.1 NC_001900.1 + 18588 0.67 0.648181
Target:  5'- aGCAguacUCGGCugcgcuGGAgCAGGAGCGCaAGCg -3'
miRNA:   3'- -CGU----AGCCGc-----CCUaGUCCUUGCGgUUG- -5'
7301 5' -55.1 NC_001900.1 + 11964 0.67 0.63707
Target:  5'- gGCuUCGGUGGucgCAGGAACuGCCGc- -3'
miRNA:   3'- -CGuAGCCGCCcuaGUCCUUG-CGGUug -5'
7301 5' -55.1 NC_001900.1 + 9859 0.67 0.625956
Target:  5'- cGguUCGgaaGCGGGAccacCGGGAccGCGCCGAg -3'
miRNA:   3'- -CguAGC---CGCCCUa---GUCCU--UGCGGUUg -5'
7301 5' -55.1 NC_001900.1 + 11643 0.67 0.619289
Target:  5'- cCAgCGGCuugucagugaccaccGGGGUCGGGu-CGCCGGCc -3'
miRNA:   3'- cGUaGCCG---------------CCCUAGUCCuuGCGGUUG- -5'
7301 5' -55.1 NC_001900.1 + 27879 0.67 0.615957
Target:  5'- aGCGcCuGCGGGAgcugCAGGAugcaguacgugcccuCGCCGACu -3'
miRNA:   3'- -CGUaGcCGCCCUa---GUCCUu--------------GCGGUUG- -5'
7301 5' -55.1 NC_001900.1 + 8047 0.67 0.614847
Target:  5'- cCAgUGGUGGGGcCAGGGGCcugacggcaagGCCAACg -3'
miRNA:   3'- cGUaGCCGCCCUaGUCCUUG-----------CGGUUG- -5'
7301 5' -55.1 NC_001900.1 + 6238 0.67 0.603753
Target:  5'- gGCAUCgcccugaucuggGGCGGGAUCG---ACGCgGGCg -3'
miRNA:   3'- -CGUAG------------CCGCCCUAGUccuUGCGgUUG- -5'
7301 5' -55.1 NC_001900.1 + 9382 0.68 0.58165
Target:  5'- aGCGacaGGCugucgaGGGuuuccggcUCGGGGACGCCGACg -3'
miRNA:   3'- -CGUag-CCG------CCCu-------AGUCCUUGCGGUUG- -5'
7301 5' -55.1 NC_001900.1 + 7246 0.71 0.387878
Target:  5'- uGCGUUGGCGGGAgccaUCAucGACGCCcuCa -3'
miRNA:   3'- -CGUAGCCGCCCU----AGUccUUGCGGuuG- -5'
7301 5' -55.1 NC_001900.1 + 7143 0.72 0.344269
Target:  5'- cCAUCGGCcGGAUCGugauGAAgGCCAGCg -3'
miRNA:   3'- cGUAGCCGcCCUAGUc---CUUgCGGUUG- -5'
7301 5' -55.1 NC_001900.1 + 17381 0.73 0.319846
Target:  5'- cGCGUUGGCuccugcguuGGAcaacgUCAGGAACGCCuGCg -3'
miRNA:   3'- -CGUAGCCGc--------CCU-----AGUCCUUGCGGuUG- -5'
7301 5' -55.1 NC_001900.1 + 14677 1.13 0.0005
Target:  5'- cGCAUCGGCGGGAUCAGGAACGCCAACg -3'
miRNA:   3'- -CGUAGCCGCCCUAGUCCUUGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.