miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7302 3' -57.6 NC_001900.1 + 5050 0.66 0.57356
Target:  5'- cGACgagcaugaCCggGGUGAAUcCCAGGGCCg-- -3'
miRNA:   3'- cCUGa-------GGa-CCGCUUA-GGUCCCGGacu -5'
7302 3' -57.6 NC_001900.1 + 24726 0.66 0.541419
Target:  5'- cGGCg-CUGGUGGuacCgCAGGGCCUGGu -3'
miRNA:   3'- cCUGagGACCGCUua-G-GUCCCGGACU- -5'
7302 3' -57.6 NC_001900.1 + 5000 0.66 0.541419
Target:  5'- cGGGCUCCagcacGGCGg--CgGGGGCCg-- -3'
miRNA:   3'- -CCUGAGGa----CCGCuuaGgUCCCGGacu -5'
7302 3' -57.6 NC_001900.1 + 14665 0.69 0.384114
Target:  5'- uGAC-CCcGGCGAGUCgAGGGUCUu- -3'
miRNA:   3'- cCUGaGGaCCGCUUAGgUCCCGGAcu -5'
7302 3' -57.6 NC_001900.1 + 5533 0.7 0.349745
Target:  5'- gGGACUUCUcccGGUGGGcUCacggcaGGGGCCUGGu -3'
miRNA:   3'- -CCUGAGGA---CCGCUU-AGg-----UCCCGGACU- -5'
7302 3' -57.6 NC_001900.1 + 8043 0.7 0.333401
Target:  5'- aGAC-CCagUGGUGGggCCAGGGgCCUGAc -3'
miRNA:   3'- cCUGaGG--ACCGCUuaGGUCCC-GGACU- -5'
7302 3' -57.6 NC_001900.1 + 33785 0.7 0.32544
Target:  5'- -aGCUCCUGGCGu-UCCAGGcGCuCUa- -3'
miRNA:   3'- ccUGAGGACCGCuuAGGUCC-CG-GAcu -5'
7302 3' -57.6 NC_001900.1 + 23475 0.71 0.302413
Target:  5'- uGGCUcCCUGGUcGGUCCAcucGGCCUGAu -3'
miRNA:   3'- cCUGA-GGACCGcUUAGGUc--CCGGACU- -5'
7302 3' -57.6 NC_001900.1 + 154 0.74 0.195345
Target:  5'- uGGCUCCUGGUGGcUCaCAGcGCCUGGg -3'
miRNA:   3'- cCUGAGGACCGCUuAG-GUCcCGGACU- -5'
7302 3' -57.6 NC_001900.1 + 18259 0.77 0.113066
Target:  5'- aGGCUCCUggcugaucgaGGCGGgcaagaacgucGUCCAGGGUCUGAu -3'
miRNA:   3'- cCUGAGGA----------CCGCU-----------UAGGUCCCGGACU- -5'
7302 3' -57.6 NC_001900.1 + 14900 1.11 0.000388
Target:  5'- aGGACUCCUGGCGAAUCCAGGGCCUGAu -3'
miRNA:   3'- -CCUGAGGACCGCUUAGGUCCCGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.