miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7302 5' -57.4 NC_001900.1 + 10477 0.66 0.606706
Target:  5'- aGcCCGCuCACgCGGGAUCaCGCCcugGCCg -3'
miRNA:   3'- gCaGGCGuGUG-GCUCUAG-GUGG---UGGa -5'
7302 5' -57.4 NC_001900.1 + 21622 0.66 0.574271
Target:  5'- gCGUCgGCACAUCGGuGcUCgGCUACCc -3'
miRNA:   3'- -GCAGgCGUGUGGCU-CuAGgUGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 44514 0.66 0.574271
Target:  5'- uGUCuCGCugGCCGuuguacGGAccugaccacgUCCACCACUc -3'
miRNA:   3'- gCAG-GCGugUGGC------UCU----------AGGUGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 39648 0.66 0.563541
Target:  5'- gCGUCgagCGCgaacaGCACCGGGuucAUCCGgCACCUg -3'
miRNA:   3'- -GCAG---GCG-----UGUGGCUC---UAGGUgGUGGA- -5'
7302 5' -57.4 NC_001900.1 + 25089 0.66 0.563541
Target:  5'- ---aCGgGCACCGGGA-CCACCgGCCa -3'
miRNA:   3'- gcagGCgUGUGGCUCUaGGUGG-UGGa -5'
7302 5' -57.4 NC_001900.1 + 28016 0.66 0.551801
Target:  5'- cCGUUCGgGCcgguguaACCGGGugcggagCCGCCACCg -3'
miRNA:   3'- -GCAGGCgUG-------UGGCUCua-----GGUGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 26153 0.67 0.531706
Target:  5'- gCGUgCGUGCugUaGAGAUCCuugguGCCGCCa -3'
miRNA:   3'- -GCAgGCGUGugG-CUCUAGG-----UGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 26168 0.67 0.521235
Target:  5'- --cCCGguCGCCGAGAUgaCCcCCGCCc -3'
miRNA:   3'- gcaGGCguGUGGCUCUA--GGuGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 29736 0.67 0.510845
Target:  5'- aGUCUGCucggcCACCGuGuuggccCCACCGCCg -3'
miRNA:   3'- gCAGGCGu----GUGGCuCua----GGUGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 29897 0.67 0.500543
Target:  5'- uCGUCCGguCGcCCGAGAg-CGCgGCCa -3'
miRNA:   3'- -GCAGGCguGU-GGCUCUagGUGgUGGa -5'
7302 5' -57.4 NC_001900.1 + 3919 0.67 0.490333
Target:  5'- uCGUCggcgaGCugGCCGAGAcgCCGguacCCGCCUc -3'
miRNA:   3'- -GCAGg----CGugUGGCUCUa-GGU----GGUGGA- -5'
7302 5' -57.4 NC_001900.1 + 5718 0.68 0.460311
Target:  5'- uGUCUGgGCGCuCGAcGGUCCAgUACCa -3'
miRNA:   3'- gCAGGCgUGUG-GCU-CUAGGUgGUGGa -5'
7302 5' -57.4 NC_001900.1 + 34034 0.68 0.431291
Target:  5'- cCGUgCGCuucuugaccgGCACCGGGAUCCGCaACUc -3'
miRNA:   3'- -GCAgGCG----------UGUGGCUCUAGGUGgUGGa -5'
7302 5' -57.4 NC_001900.1 + 14807 0.68 0.431291
Target:  5'- cCGUCaguggaGUACGCCGAcAUCUcgACCACCg -3'
miRNA:   3'- -GCAGg-----CGUGUGGCUcUAGG--UGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 32742 0.69 0.403371
Target:  5'- aGUUCGCugGCCG-GAaCUGCUACCUc -3'
miRNA:   3'- gCAGGCGugUGGCuCUaGGUGGUGGA- -5'
7302 5' -57.4 NC_001900.1 + 1697 0.69 0.385405
Target:  5'- ---gCGCugACCGGGGgugUCGCCACCg -3'
miRNA:   3'- gcagGCGugUGGCUCUa--GGUGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 40755 0.7 0.334772
Target:  5'- gCG-CCGCGagcgcCGCCGuGAaCCACCACCa -3'
miRNA:   3'- -GCaGGCGU-----GUGGCuCUaGGUGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 1923 0.71 0.319011
Target:  5'- uCGcCCGCAgGCCGAGG-CCGUCACCc -3'
miRNA:   3'- -GCaGGCGUgUGGCUCUaGGUGGUGGa -5'
7302 5' -57.4 NC_001900.1 + 37081 0.72 0.282071
Target:  5'- aCGguggCCGUGCGUCGAGAUCCagcccggaGCCACCUu -3'
miRNA:   3'- -GCa---GGCGUGUGGCUCUAGG--------UGGUGGA- -5'
7302 5' -57.4 NC_001900.1 + 31554 0.73 0.242319
Target:  5'- -aUCuCGCGCACCGuccgggGGAUCUACCACUg -3'
miRNA:   3'- gcAG-GCGUGUGGC------UCUAGGUGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.