miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7303 3' -53.8 NC_001900.1 + 25191 0.66 0.803339
Target:  5'- aUGAccucacccacGGACCAUCGGgugUCUGU-UGGCCCu -3'
miRNA:   3'- gACU----------UCUGGUAGCU---GGACAgGCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 3263 0.66 0.803339
Target:  5'- cCUGGAGAUgcUCuGCCUGgucaCCGGCCg -3'
miRNA:   3'- -GACUUCUGguAGcUGGACa---GGCUGGg -5'
7303 3' -53.8 NC_001900.1 + 36769 0.66 0.793614
Target:  5'- -aGAcguGGCCGUCGACCgagaaUCGGCCUc -3'
miRNA:   3'- gaCUu--CUGGUAGCUGGaca--GGCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 12199 0.66 0.793614
Target:  5'- -aGAAGACC-UCGAUC-GUCCagcaguucGCCCa -3'
miRNA:   3'- gaCUUCUGGuAGCUGGaCAGGc-------UGGG- -5'
7303 3' -53.8 NC_001900.1 + 23389 0.66 0.793614
Target:  5'- -aGGAcGGCCAUCaGGCCgagugGaCCGACCa -3'
miRNA:   3'- gaCUU-CUGGUAG-CUGGa----CaGGCUGGg -5'
7303 3' -53.8 NC_001900.1 + 25260 0.66 0.793614
Target:  5'- uUGucGAUCAUCGucggcaggcucGCCUcGUacCCGGCCCg -3'
miRNA:   3'- gACuuCUGGUAGC-----------UGGA-CA--GGCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 43315 0.66 0.793614
Target:  5'- -gGAGGACCga-GACUgggCUGGCCCg -3'
miRNA:   3'- gaCUUCUGGuagCUGGacaGGCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 35160 0.66 0.783719
Target:  5'- -cGAGGACCAcgaCGACUacgCUGACCUg -3'
miRNA:   3'- gaCUUCUGGUa--GCUGGacaGGCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 34633 0.66 0.773664
Target:  5'- uCUGGAGccugGCCAagGcuCCUGUC-GACCCg -3'
miRNA:   3'- -GACUUC----UGGUagCu-GGACAGgCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 18257 0.66 0.7696
Target:  5'- -cGGAGACCugcugcacaccgcUgGACCaGgagCCGACCCa -3'
miRNA:   3'- gaCUUCUGGu------------AgCUGGaCa--GGCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 45976 0.66 0.76346
Target:  5'- ----cGGCCAUCGAagUCUugaGUCgGACCCg -3'
miRNA:   3'- gacuuCUGGUAGCU--GGA---CAGgCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 949 0.66 0.76346
Target:  5'- -cGAGGAgcggaugcCCAUCGAgCUGaUCgCGACCg -3'
miRNA:   3'- gaCUUCU--------GGUAGCUgGAC-AG-GCUGGg -5'
7303 3' -53.8 NC_001900.1 + 32256 0.66 0.762432
Target:  5'- gUGAcGACCAUCGGCgaguugGUCauguucggcagaaCGGCCCg -3'
miRNA:   3'- gACUuCUGGUAGCUGga----CAG-------------GCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 44466 0.67 0.75312
Target:  5'- -cGAAGaACUucUCGACCUGcUCCaGGCCg -3'
miRNA:   3'- gaCUUC-UGGu-AGCUGGAC-AGG-CUGGg -5'
7303 3' -53.8 NC_001900.1 + 5623 0.67 0.75312
Target:  5'- gUGggGACCAggccCCUG-CCGugaGCCCa -3'
miRNA:   3'- gACuuCUGGUagcuGGACaGGC---UGGG- -5'
7303 3' -53.8 NC_001900.1 + 28538 0.67 0.742655
Target:  5'- gCUGAGGACCAcgaguucuUCGACgUG-CUGuACCa -3'
miRNA:   3'- -GACUUCUGGU--------AGCUGgACaGGC-UGGg -5'
7303 3' -53.8 NC_001900.1 + 24480 0.67 0.732077
Target:  5'- ----cGACCAggugUGGCCagcGUUCGACCCg -3'
miRNA:   3'- gacuuCUGGUa---GCUGGa--CAGGCUGGG- -5'
7303 3' -53.8 NC_001900.1 + 14443 0.67 0.732077
Target:  5'- -gGAAGuccacaucGCCGUCGACCUcUUCGAUCg -3'
miRNA:   3'- gaCUUC--------UGGUAGCUGGAcAGGCUGGg -5'
7303 3' -53.8 NC_001900.1 + 2511 0.67 0.710627
Target:  5'- --cGGGGCCGUCGACCUcacacagCC-ACCCg -3'
miRNA:   3'- gacUUCUGGUAGCUGGAca-----GGcUGGG- -5'
7303 3' -53.8 NC_001900.1 + 13440 0.68 0.699779
Target:  5'- uCUGGgauccgacgccGGAUCAugcgcUCGACCUGUUCGAgUCg -3'
miRNA:   3'- -GACU-----------UCUGGU-----AGCUGGACAGGCUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.