miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7303 5' -60.9 NC_001900.1 + 32606 0.66 0.416872
Target:  5'- cGaGGCCAgCCGGUcGGUCcugaccgaacugGAGCGUCa -3'
miRNA:   3'- aCcUCGGU-GGCCGaCCAG------------CUCGCAGc -5'
7303 5' -60.9 NC_001900.1 + 4791 0.67 0.356141
Target:  5'- gUGGAcCCACUGcGCgUGGUCGcgugugacuaugAGCGUCa -3'
miRNA:   3'- -ACCUcGGUGGC-CG-ACCAGC------------UCGCAGc -5'
7303 5' -60.9 NC_001900.1 + 28486 0.67 0.332087
Target:  5'- cGGAggccaaaucccGCUACUGGgUGGUCGAGU-UCGa -3'
miRNA:   3'- aCCU-----------CGGUGGCCgACCAGCUCGcAGC- -5'
7303 5' -60.9 NC_001900.1 + 37070 0.68 0.309249
Target:  5'- cGGAcGCCGCCacGG-UGGcCGuGCGUCGa -3'
miRNA:   3'- aCCU-CGGUGG--CCgACCaGCuCGCAGC- -5'
7303 5' -60.9 NC_001900.1 + 13932 0.68 0.308508
Target:  5'- cGGGGUagacgagCACCGGCUGGUacCGGGC-UCc -3'
miRNA:   3'- aCCUCG-------GUGGCCGACCA--GCUCGcAGc -5'
7303 5' -60.9 NC_001900.1 + 1180 0.68 0.301906
Target:  5'- gUGGAGCCGCCGGaagcGGcCgGGGCGg-- -3'
miRNA:   3'- -ACCUCGGUGGCCga--CCaG-CUCGCagc -5'
7303 5' -60.9 NC_001900.1 + 37799 0.68 0.294699
Target:  5'- cGGuuaCGCCGGUUGcGUCGAGCGg-- -3'
miRNA:   3'- aCCucgGUGGCCGAC-CAGCUCGCagc -5'
7303 5' -60.9 NC_001900.1 + 14720 0.68 0.287627
Target:  5'- ---cGCUGCCGG-UGGUCGAGaUGUCGg -3'
miRNA:   3'- accuCGGUGGCCgACCAGCUC-GCAGC- -5'
7303 5' -60.9 NC_001900.1 + 41831 0.69 0.266553
Target:  5'- ---cGCCGCCGGUcugggcuUGGUCGGGUGUa- -3'
miRNA:   3'- accuCGGUGGCCG-------ACCAGCUCGCAgc -5'
7303 5' -60.9 NC_001900.1 + 18112 0.69 0.260673
Target:  5'- cGGuGGCaucucCCGGCUGGUUG-GCGUCc -3'
miRNA:   3'- aCC-UCGgu---GGCCGACCAGCuCGCAGc -5'
7303 5' -60.9 NC_001900.1 + 35391 0.69 0.241835
Target:  5'- gGGAGUUcaagauccuGCCcGCUGGUCGAcaucuguggGCGUCGg -3'
miRNA:   3'- aCCUCGG---------UGGcCGACCAGCU---------CGCAGC- -5'
7303 5' -60.9 NC_001900.1 + 40312 0.7 0.224146
Target:  5'- aGuGAGCCGCugCGGCcgUGGUUGGccGCGUCGa -3'
miRNA:   3'- aC-CUCGGUG--GCCG--ACCAGCU--CGCAGC- -5'
7303 5' -60.9 NC_001900.1 + 10604 0.71 0.177577
Target:  5'- gGGAGCCugggACCGuCgGGUCG-GCGUCGa -3'
miRNA:   3'- aCCUCGG----UGGCcGaCCAGCuCGCAGC- -5'
7303 5' -60.9 NC_001900.1 + 45257 0.73 0.147506
Target:  5'- gGGGGUCguuuacacgcaGCCagagaaGCUGGUCGAGCGUCa -3'
miRNA:   3'- aCCUCGG-----------UGGc-----CGACCAGCUCGCAGc -5'
7303 5' -60.9 NC_001900.1 + 15106 1.09 0.000271
Target:  5'- cUGGAGCCACCGGCUGGUCGAGCGUCGg -3'
miRNA:   3'- -ACCUCGGUGGCCGACCAGCUCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.