miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7304 3' -53.3 NC_001900.1 + 23394 0.66 0.735425
Target:  5'- gGCCAucagGCCGaguGGA-CCGAccaGGGAGCCAc- -3'
miRNA:   3'- -CGGU----UGGC---CCUaGGCU---UCUUCGGUuu -5'
7304 3' -53.3 NC_001900.1 + 24057 0.68 0.646063
Target:  5'- cGCCGuUgGGGAUCUGcAGGAuGCCGAc -3'
miRNA:   3'- -CGGUuGgCCCUAGGC-UUCUuCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 26672 0.67 0.702401
Target:  5'- aGCCcgagGACC-GGAUCCccgaGAGGggGCCGc- -3'
miRNA:   3'- -CGG----UUGGcCCUAGG----CUUCuuCGGUuu -5'
7304 3' -53.3 NC_001900.1 + 28957 0.66 0.745153
Target:  5'- cGCCGACCcagguacGGGAUgauguuggcCCGGaacucgaaguAGAAGCCGGGa -3'
miRNA:   3'- -CGGUUGG-------CCCUA---------GGCU----------UCUUCGGUUU- -5'
7304 3' -53.3 NC_001900.1 + 29481 0.66 0.766406
Target:  5'- gGCCAACUGGGGcgcUCgCG-AGAucgcucgacugauGGCCGAGg -3'
miRNA:   3'- -CGGUUGGCCCU---AG-GCuUCU-------------UCGGUUU- -5'
7304 3' -53.3 NC_001900.1 + 29957 0.73 0.362296
Target:  5'- gGCCAugacgugACCGGGGUCagCGAGGAAGCa--- -3'
miRNA:   3'- -CGGU-------UGGCCCUAG--GCUUCUUCGguuu -5'
7304 3' -53.3 NC_001900.1 + 30972 0.69 0.600673
Target:  5'- uGCCcAUCGaGGAUCUGGAGAuGCUggGg -3'
miRNA:   3'- -CGGuUGGC-CCUAGGCUUCUuCGGuuU- -5'
7304 3' -53.3 NC_001900.1 + 33168 0.66 0.756909
Target:  5'- cGCCAACCuGGGuggCgGcAGcAAGCCGAAc -3'
miRNA:   3'- -CGGUUGG-CCCua-GgCuUC-UUCGGUUU- -5'
7304 3' -53.3 NC_001900.1 + 34581 0.69 0.593888
Target:  5'- gGCacACCGGGugcugaaggcucucUCCGAGGGAGCCGu- -3'
miRNA:   3'- -CGguUGGCCCu-------------AGGCUUCUUCGGUuu -5'
7304 3' -53.3 NC_001900.1 + 36870 0.67 0.724511
Target:  5'- aGCCcgAGCUGGu-UCCGAucgucGGAGGCCGAu -3'
miRNA:   3'- -CGG--UUGGCCcuAGGCU-----UCUUCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 38532 0.68 0.633573
Target:  5'- aGCUGugCGGGAUCcCGAcggucggcguuccAGggGCuCAGAu -3'
miRNA:   3'- -CGGUugGCCCUAG-GCU-------------UCuuCG-GUUU- -5'
7304 3' -53.3 NC_001900.1 + 41210 0.76 0.247231
Target:  5'- cCCGgagaGCCcGGAUCCGAAGAAGCCu-- -3'
miRNA:   3'- cGGU----UGGcCCUAGGCUUCUUCGGuuu -5'
7304 3' -53.3 NC_001900.1 + 41686 0.7 0.501062
Target:  5'- uCCGGCgCGGGAUCuCGAAGuuGUCAGc -3'
miRNA:   3'- cGGUUG-GCCCUAG-GCUUCuuCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 43029 0.67 0.691231
Target:  5'- -aCAGCCGGGAcagCCGggGAGcGUCc-- -3'
miRNA:   3'- cgGUUGGCCCUa--GGCuuCUU-CGGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.