miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7304 3' -53.3 NC_001900.1 + 33168 0.66 0.756909
Target:  5'- cGCCAACCuGGGuggCgGcAGcAAGCCGAAc -3'
miRNA:   3'- -CGGUUGG-CCCua-GgCuUC-UUCGGUUU- -5'
7304 3' -53.3 NC_001900.1 + 3912 0.66 0.746228
Target:  5'- cGCCGAUCaGc--CCGGAGAAGCCGu- -3'
miRNA:   3'- -CGGUUGGcCcuaGGCUUCUUCGGUuu -5'
7304 3' -53.3 NC_001900.1 + 21706 0.67 0.724511
Target:  5'- uGCuCGACCGGGuagCCGAGcaccGAuguGCCGAc -3'
miRNA:   3'- -CG-GUUGGCCCua-GGCUU----CUu--CGGUUu -5'
7304 3' -53.3 NC_001900.1 + 36870 0.67 0.724511
Target:  5'- aGCCcgAGCUGGu-UCCGAucgucGGAGGCCGAu -3'
miRNA:   3'- -CGG--UUGGCCcuAGGCU-----UCUUCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 9692 0.67 0.691231
Target:  5'- gGCCGGCCGaccGAUCCGAGGAucgaucucGGCg--- -3'
miRNA:   3'- -CGGUUGGCc--CUAGGCUUCU--------UCGguuu -5'
7304 3' -53.3 NC_001900.1 + 18296 0.68 0.66872
Target:  5'- aCCAgcucuugaucuuGCCGGGGagcugUCCGAcGAAGUCGGAg -3'
miRNA:   3'- cGGU------------UGGCCCU-----AGGCUuCUUCGGUUU- -5'
7304 3' -53.3 NC_001900.1 + 7538 0.68 0.657404
Target:  5'- gGUCAucUUGGGAUCCGGcAGAuGCCAAu -3'
miRNA:   3'- -CGGUu-GGCCCUAGGCU-UCUuCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 24057 0.68 0.646063
Target:  5'- cGCCGuUgGGGAUCUGcAGGAuGCCGAc -3'
miRNA:   3'- -CGGUuGgCCCUAGGC-UUCUuCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 38532 0.68 0.633573
Target:  5'- aGCUGugCGGGAUCcCGAcggucggcguuccAGggGCuCAGAu -3'
miRNA:   3'- -CGGUugGCCCUAG-GCU-------------UCuuCG-GUUU- -5'
7304 3' -53.3 NC_001900.1 + 9885 0.68 0.622217
Target:  5'- uGCCGuacagguccgagaGCCGGG-UCCGGuucGGAAGCgGGAc -3'
miRNA:   3'- -CGGU-------------UGGCCCuAGGCU---UCUUCGgUUU- -5'
7304 3' -53.3 NC_001900.1 + 30972 0.69 0.600673
Target:  5'- uGCCcAUCGaGGAUCUGGAGAuGCUggGg -3'
miRNA:   3'- -CGGuUGGC-CCUAGGCUUCUuCGGuuU- -5'
7304 3' -53.3 NC_001900.1 + 34581 0.69 0.593888
Target:  5'- gGCacACCGGGugcugaaggcucucUCCGAGGGAGCCGu- -3'
miRNA:   3'- -CGguUGGCCCu-------------AGGCUUCUUCGGUuu -5'
7304 3' -53.3 NC_001900.1 + 913 0.7 0.533617
Target:  5'- gGCCcccuCCGGGAUCCcgucGAagcAGAAGUCGAAc -3'
miRNA:   3'- -CGGuu--GGCCCUAGG----CU---UCUUCGGUUU- -5'
7304 3' -53.3 NC_001900.1 + 23382 0.66 0.767453
Target:  5'- cCCAGCCGGGG-CCGAcc--GCCGu- -3'
miRNA:   3'- cGGUUGGCCCUaGGCUucuuCGGUuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.