miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7304 3' -53.3 NC_001900.1 + 38532 0.68 0.633573
Target:  5'- aGCUGugCGGGAUCcCGAcggucggcguuccAGggGCuCAGAu -3'
miRNA:   3'- -CGGUugGCCCUAG-GCU-------------UCuuCG-GUUU- -5'
7304 3' -53.3 NC_001900.1 + 9885 0.68 0.622217
Target:  5'- uGCCGuacagguccgagaGCCGGG-UCCGGuucGGAAGCgGGAc -3'
miRNA:   3'- -CGGU-------------UGGCCCuAGGCU---UCUUCGgUUU- -5'
7304 3' -53.3 NC_001900.1 + 30972 0.69 0.600673
Target:  5'- uGCCcAUCGaGGAUCUGGAGAuGCUggGg -3'
miRNA:   3'- -CGGuUGGC-CCUAGGCUUCUuCGGuuU- -5'
7304 3' -53.3 NC_001900.1 + 34581 0.69 0.593888
Target:  5'- gGCacACCGGGugcugaaggcucucUCCGAGGGAGCCGu- -3'
miRNA:   3'- -CGguUGGCCCu-------------AGGCUUCUUCGGUuu -5'
7304 3' -53.3 NC_001900.1 + 15752 0.69 0.566893
Target:  5'- -aCGAUCGGGAucUCCGAAGAugugaccgucgAGCUGAAg -3'
miRNA:   3'- cgGUUGGCCCU--AGGCUUCU-----------UCGGUUU- -5'
7304 3' -53.3 NC_001900.1 + 913 0.7 0.533617
Target:  5'- gGCCcccuCCGGGAUCCcgucGAagcAGAAGUCGAAc -3'
miRNA:   3'- -CGGuu--GGCCCUAGG----CU---UCUUCGGUUU- -5'
7304 3' -53.3 NC_001900.1 + 41686 0.7 0.501062
Target:  5'- uCCGGCgCGGGAUCuCGAAGuuGUCAGc -3'
miRNA:   3'- cGGUUG-GCCCUAG-GCUUCuuCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 9411 0.71 0.459089
Target:  5'- -aCAGCCGGGGguaUCCGAcGuGAGCCAGc -3'
miRNA:   3'- cgGUUGGCCCU---AGGCUuC-UUCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 839 0.72 0.419062
Target:  5'- uGCUucgaCGGGAUCCcgGAGGggGCCAc- -3'
miRNA:   3'- -CGGuug-GCCCUAGG--CUUCuuCGGUuu -5'
7304 3' -53.3 NC_001900.1 + 29957 0.73 0.362296
Target:  5'- gGCCAugacgugACCGGGGUCagCGAGGAAGCa--- -3'
miRNA:   3'- -CGGU-------UGGCCCUAG--GCUUCUUCGguuu -5'
7304 3' -53.3 NC_001900.1 + 5099 0.75 0.274814
Target:  5'- cGUCGACUGGGAgucCCGAggAGAAGUCAAc -3'
miRNA:   3'- -CGGUUGGCCCUa--GGCU--UCUUCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 1696 0.75 0.271948
Target:  5'- cGCUGACCGGGGgugucgccaccggCCG-AGAAGCCGAc -3'
miRNA:   3'- -CGGUUGGCCCUa------------GGCuUCUUCGGUUu -5'
7304 3' -53.3 NC_001900.1 + 41210 0.76 0.247231
Target:  5'- cCCGgagaGCCcGGAUCCGAAGAAGCCu-- -3'
miRNA:   3'- cGGU----UGGcCCUAGGCUUCUUCGGuuu -5'
7304 3' -53.3 NC_001900.1 + 16343 1.08 0.001359
Target:  5'- gGCCAACCGGGAUCCGAAGAAGCCAAAg -3'
miRNA:   3'- -CGGUUGGCCCUAGGCUUCUUCGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.