miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7304 5' -58.6 NC_001900.1 + 43049 0.66 0.512727
Target:  5'- gGCCgCGAGGCu---UCGCGUCCCccucGACg -3'
miRNA:   3'- gUGG-GUUCCGuaugGGCGCAGGG----CUG- -5'
7304 5' -58.6 NC_001900.1 + 34427 0.66 0.512727
Target:  5'- aACCUAGGGCAcaucaACCuCGCGgcguucguuaCCGACg -3'
miRNA:   3'- gUGGGUUCCGUa----UGG-GCGCag--------GGCUG- -5'
7304 5' -58.6 NC_001900.1 + 29995 0.66 0.492195
Target:  5'- --aCCAGGcGCAggaGCuUCGCGUCCUGGCc -3'
miRNA:   3'- gugGGUUC-CGUa--UG-GGCGCAGGGCUG- -5'
7304 5' -58.6 NC_001900.1 + 21468 0.66 0.492195
Target:  5'- aGCCCGaugaAGGCGUucACCCucucgGCGUUCgCGGCc -3'
miRNA:   3'- gUGGGU----UCCGUA--UGGG-----CGCAGG-GCUG- -5'
7304 5' -58.6 NC_001900.1 + 14614 0.66 0.482073
Target:  5'- gUACUCGGGGCAUcGCCCccauGUGUCCUccuuacgaGACg -3'
miRNA:   3'- -GUGGGUUCCGUA-UGGG----CGCAGGG--------CUG- -5'
7304 5' -58.6 NC_001900.1 + 19394 0.66 0.48006
Target:  5'- -cCCCAAGGUcgagaugaagaccgACCCGCGUggcaacaccaucaaCCUGACg -3'
miRNA:   3'- guGGGUUCCGua------------UGGGCGCA--------------GGGCUG- -5'
7304 5' -58.6 NC_001900.1 + 42771 0.66 0.472051
Target:  5'- gGCaCCAGGuCGUGCCagGCGUccagCCCGACg -3'
miRNA:   3'- gUG-GGUUCcGUAUGGg-CGCA----GGGCUG- -5'
7304 5' -58.6 NC_001900.1 + 23153 0.66 0.472051
Target:  5'- aGCCCgGAGGCuaccugGCUCGCGgugUCCCG-Ca -3'
miRNA:   3'- gUGGG-UUCCGua----UGGGCGC---AGGGCuG- -5'
7304 5' -58.6 NC_001900.1 + 47555 0.66 0.472051
Target:  5'- uCugCCGAGGCAccaacaucAUUCGCGUCCgcUGACu -3'
miRNA:   3'- -GugGGUUCCGUa-------UGGGCGCAGG--GCUG- -5'
7304 5' -58.6 NC_001900.1 + 38742 0.67 0.442643
Target:  5'- --aCCGAGGC-UGCCUGgCGaUCCCGuACa -3'
miRNA:   3'- gugGGUUCCGuAUGGGC-GC-AGGGC-UG- -5'
7304 5' -58.6 NC_001900.1 + 10398 0.67 0.433072
Target:  5'- aCGgCCAGGGCGUGauCCCGCGUgagCgGGCu -3'
miRNA:   3'- -GUgGGUUCCGUAU--GGGCGCAg--GgCUG- -5'
7304 5' -58.6 NC_001900.1 + 23884 0.68 0.390654
Target:  5'- uCGgCCAGGGCAccccgaguucggucACCCGCGUCacgaucaaCGACa -3'
miRNA:   3'- -GUgGGUUCCGUa-------------UGGGCGCAGg-------GCUG- -5'
7304 5' -58.6 NC_001900.1 + 39550 0.68 0.387095
Target:  5'- gGCCCAAGGguUGCCgcucacacgggaCGCcaaguaUCCCGGCc -3'
miRNA:   3'- gUGGGUUCCguAUGG------------GCGc-----AGGGCUG- -5'
7304 5' -58.6 NC_001900.1 + 639 0.68 0.378293
Target:  5'- cCGCCCGAaacggcGGCGUAUUCGCGaugUCgCGGCa -3'
miRNA:   3'- -GUGGGUU------CCGUAUGGGCGC---AGgGCUG- -5'
7304 5' -58.6 NC_001900.1 + 27121 0.69 0.352705
Target:  5'- gCGCCCA-GGCGUACCaacCGUgUCGGCu -3'
miRNA:   3'- -GUGGGUuCCGUAUGGgc-GCAgGGCUG- -5'
7304 5' -58.6 NC_001900.1 + 6709 0.69 0.336338
Target:  5'- aGCCCAucGGCAacUACCCcgcuGCGgccuUCCCGAUg -3'
miRNA:   3'- gUGGGUu-CCGU--AUGGG----CGC----AGGGCUG- -5'
7304 5' -58.6 NC_001900.1 + 30085 0.7 0.305291
Target:  5'- gCAUCCcGGcGCAgacgcUGCCCGCGU-CCGACu -3'
miRNA:   3'- -GUGGGuUC-CGU-----AUGGGCGCAgGGCUG- -5'
7304 5' -58.6 NC_001900.1 + 25818 0.71 0.262922
Target:  5'- uGCgCCGGGGCGcgGCCCGCGUCggCGAg -3'
miRNA:   3'- gUG-GGUUCCGUa-UGGGCGCAGg-GCUg -5'
7304 5' -58.6 NC_001900.1 + 4011 0.72 0.203071
Target:  5'- uCGCCgugGAGGCggGUACCgGCGUCUCGGCc -3'
miRNA:   3'- -GUGGg--UUCCG--UAUGGgCGCAGGGCUG- -5'
7304 5' -58.6 NC_001900.1 + 35005 0.72 0.202537
Target:  5'- uCGCCCAcaAGGagcgcgucuacgaCGUGuCCCGCGUCCgGGCg -3'
miRNA:   3'- -GUGGGU--UCC-------------GUAU-GGGCGCAGGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.