miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7305 5' -55.9 NC_001900.1 + 16302 0.66 0.670661
Target:  5'- aUCUaCGACGcagUCCAGGCgGGCaacCACa -3'
miRNA:   3'- -AGGaGCUGCa--AGGUCUGaCCGga-GUG- -5'
7305 5' -55.9 NC_001900.1 + 11282 0.66 0.65964
Target:  5'- cUCCUCGAUGUg--GGGCUuGGUCUCu- -3'
miRNA:   3'- -AGGAGCUGCAaggUCUGA-CCGGAGug -5'
7305 5' -55.9 NC_001900.1 + 43141 0.66 0.65964
Target:  5'- aUCCUgGGCaa-CCAuGAUcGGCCUCACc -3'
miRNA:   3'- -AGGAgCUGcaaGGU-CUGaCCGGAGUG- -5'
7305 5' -55.9 NC_001900.1 + 22177 0.66 0.65964
Target:  5'- aCCUCGcuGCGUuguucaugUCguGccGCUGGCCUCGg -3'
miRNA:   3'- aGGAGC--UGCA--------AGguC--UGACCGGAGUg -5'
7305 5' -55.9 NC_001900.1 + 33772 0.66 0.637531
Target:  5'- gUCCUCGGCGUcucggCCGaaccgugcGGCcacGGCCUCGa -3'
miRNA:   3'- -AGGAGCUGCAa----GGU--------CUGa--CCGGAGUg -5'
7305 5' -55.9 NC_001900.1 + 43890 0.66 0.626464
Target:  5'- gCCagaagCGGCGUUCCGGuucGCUcGCgCUCACa -3'
miRNA:   3'- aGGa----GCUGCAAGGUC---UGAcCG-GAGUG- -5'
7305 5' -55.9 NC_001900.1 + 28523 0.67 0.604354
Target:  5'- uUCUUCGACGUgcuguaCCAGcAgUGGUCgCACa -3'
miRNA:   3'- -AGGAGCUGCAa-----GGUC-UgACCGGaGUG- -5'
7305 5' -55.9 NC_001900.1 + 28687 0.67 0.581244
Target:  5'- cUCCUCGGCGauguaCCAGGgcagcucCUGGCCgUCGa -3'
miRNA:   3'- -AGGAGCUGCaa---GGUCU-------GACCGG-AGUg -5'
7305 5' -55.9 NC_001900.1 + 42350 0.67 0.571392
Target:  5'- cUCCUCGAugcucUGUUcCCGGACUG-CC-CGCg -3'
miRNA:   3'- -AGGAGCU-----GCAA-GGUCUGACcGGaGUG- -5'
7305 5' -55.9 NC_001900.1 + 41069 0.67 0.560494
Target:  5'- cUCCUCcgaGACGUUgcgggCCAGGCcGGugaCCUCGCg -3'
miRNA:   3'- -AGGAG---CUGCAA-----GGUCUGaCC---GGAGUG- -5'
7305 5' -55.9 NC_001900.1 + 6056 0.68 0.53888
Target:  5'- uUCCUCGACGUagCGGGC-GuGCCcCAUg -3'
miRNA:   3'- -AGGAGCUGCAagGUCUGaC-CGGaGUG- -5'
7305 5' -55.9 NC_001900.1 + 895 0.68 0.524984
Target:  5'- cUCCUCGAagGUcgaccaggcgcuuuUCCGcGCUGGCCUC-Ca -3'
miRNA:   3'- -AGGAGCUg-CA--------------AGGUcUGACCGGAGuG- -5'
7305 5' -55.9 NC_001900.1 + 11268 0.69 0.475993
Target:  5'- gUCUUCGACGUggagaacuggcCCGGAaaGGCCgCACa -3'
miRNA:   3'- -AGGAGCUGCAa----------GGUCUgaCCGGaGUG- -5'
7305 5' -55.9 NC_001900.1 + 15904 0.69 0.445938
Target:  5'- gUCCUCGACc-UCCuuGAC-GGCCUCGa -3'
miRNA:   3'- -AGGAGCUGcaAGGu-CUGaCCGGAGUg -5'
7305 5' -55.9 NC_001900.1 + 17069 1.09 0.000765
Target:  5'- cUCCUCGACGUUCCAGACUGGCCUCACc -3'
miRNA:   3'- -AGGAGCUGCAAGGUCUGACCGGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.