miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7306 3' -55.6 NC_001900.1 + 31505 0.66 0.655067
Target:  5'- aUGguGGCGGggUUCAcGCCGuaGUUGUCg -3'
miRNA:   3'- gACguCCGCU--AAGU-CGGCuaCGACGG- -5'
7306 3' -55.6 NC_001900.1 + 12169 0.66 0.643901
Target:  5'- -aGCAGGCGAaggacuacUUC-GCCGAg---GCCg -3'
miRNA:   3'- gaCGUCCGCU--------AAGuCGGCUacgaCGG- -5'
7306 3' -55.6 NC_001900.1 + 33770 0.66 0.61038
Target:  5'- aUGUccucGGCGucUCGGCCGAaccgUGCgGCCa -3'
miRNA:   3'- gACGu---CCGCuaAGUCGGCU----ACGaCGG- -5'
7306 3' -55.6 NC_001900.1 + 6782 0.67 0.588112
Target:  5'- -cGCAGcGgGGUaguuGCCGAUggGCUGCCa -3'
miRNA:   3'- gaCGUC-CgCUAagu-CGGCUA--CGACGG- -5'
7306 3' -55.6 NC_001900.1 + 34770 0.67 0.565997
Target:  5'- -gGCAGGCGGUguUC-GCCGGUcgGCUcGCa -3'
miRNA:   3'- gaCGUCCGCUA--AGuCGGCUA--CGA-CGg -5'
7306 3' -55.6 NC_001900.1 + 28313 0.68 0.52249
Target:  5'- cCUGCucccGGUGGaaUgAGCCGAgccacagcuUGCUGCCg -3'
miRNA:   3'- -GACGu---CCGCUa-AgUCGGCU---------ACGACGG- -5'
7306 3' -55.6 NC_001900.1 + 2965 0.68 0.513938
Target:  5'- -aGCgAGGCGAgcgaacugccagUCGGUCGGUucguagaacuucacgGCUGCCg -3'
miRNA:   3'- gaCG-UCCGCUa-----------AGUCGGCUA---------------CGACGG- -5'
7306 3' -55.6 NC_001900.1 + 25536 0.68 0.490725
Target:  5'- -cGCuGGCGGcUCAgGCCGGUGCgacGaCCa -3'
miRNA:   3'- gaCGuCCGCUaAGU-CGGCUACGa--C-GG- -5'
7306 3' -55.6 NC_001900.1 + 43560 0.69 0.480336
Target:  5'- -aGCAGGCGGcgCA-CCGA-GCUGgCCg -3'
miRNA:   3'- gaCGUCCGCUaaGUcGGCUaCGAC-GG- -5'
7306 3' -55.6 NC_001900.1 + 24090 0.69 0.47724
Target:  5'- -cGCGGGC--UUCGGCCGcgcugguagcaccuGUGCcGCCg -3'
miRNA:   3'- gaCGUCCGcuAAGUCGGC--------------UACGaCGG- -5'
7306 3' -55.6 NC_001900.1 + 9900 0.69 0.439908
Target:  5'- aUGCAGGCGAcugCggAGCUGAUggGCgUGCCc -3'
miRNA:   3'- gACGUCCGCUaa-G--UCGGCUA--CG-ACGG- -5'
7306 3' -55.6 NC_001900.1 + 2528 0.69 0.430107
Target:  5'- cCUGCAaGCGA-UCuGCCG-UGuCUGCCa -3'
miRNA:   3'- -GACGUcCGCUaAGuCGGCuAC-GACGG- -5'
7306 3' -55.6 NC_001900.1 + 33358 0.71 0.356581
Target:  5'- ---aGGGCGAcUCAGUCGGcgucUGCUGCUg -3'
miRNA:   3'- gacgUCCGCUaAGUCGGCU----ACGACGG- -5'
7306 3' -55.6 NC_001900.1 + 17708 0.71 0.339632
Target:  5'- uCUGCAGGCucUggGGCCuGUGCUGaCCg -3'
miRNA:   3'- -GACGUCCGcuAagUCGGcUACGAC-GG- -5'
7306 3' -55.6 NC_001900.1 + 31601 0.75 0.213481
Target:  5'- -aGCuucuGGCGGUUCGGCCGGUuCggGCCg -3'
miRNA:   3'- gaCGu---CCGCUAAGUCGGCUAcGa-CGG- -5'
7306 3' -55.6 NC_001900.1 + 17492 0.81 0.075049
Target:  5'- uCUGCAGGCGAUgggUCAGCuCGGUgguccGCUGUCg -3'
miRNA:   3'- -GACGUCCGCUA---AGUCG-GCUA-----CGACGG- -5'
7306 3' -55.6 NC_001900.1 + 17774 1.11 0.000518
Target:  5'- gCUGCAGGCGAUUCAGCCGAUGCUGCCc -3'
miRNA:   3'- -GACGUCCGCUAAGUCGGCUACGACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.