miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7307 5' -57.3 NC_001900.1 + 17592 0.66 0.614314
Target:  5'- aGCU-UGcUCGGCaacgUCCUCGGGAcUCUg -3'
miRNA:   3'- gCGAcACuGGCCGa---AGGAGCCCU-AGG- -5'
7307 5' -57.3 NC_001900.1 + 33116 0.66 0.603483
Target:  5'- gGCgGUGGCCaGCagcaccagUCUCGGGcUCCg -3'
miRNA:   3'- gCGaCACUGGcCGaa------GGAGCCCuAGG- -5'
7307 5' -57.3 NC_001900.1 + 8570 0.66 0.578678
Target:  5'- cCGCUG-GACCGGggccagaagaucacCCUCGGGuucgacggGUCCa -3'
miRNA:   3'- -GCGACaCUGGCCgaa-----------GGAGCCC--------UAGG- -5'
7307 5' -57.3 NC_001900.1 + 1408 0.68 0.457775
Target:  5'- gCGUUGaacGCCGcacGCUUCUgcgCGGGGUCCa -3'
miRNA:   3'- -GCGACac-UGGC---CGAAGGa--GCCCUAGG- -5'
7307 5' -57.3 NC_001900.1 + 30870 0.68 0.448041
Target:  5'- uGCUc-GACCGGUg-CUUCGGGAUCa -3'
miRNA:   3'- gCGAcaCUGGCCGaaGGAGCCCUAGg -5'
7307 5' -57.3 NC_001900.1 + 40534 0.69 0.438423
Target:  5'- uCGCUGa---CGGUUUCCgcgUCGGGGUCUc -3'
miRNA:   3'- -GCGACacugGCCGAAGG---AGCCCUAGG- -5'
7307 5' -57.3 NC_001900.1 + 929 0.69 0.438423
Target:  5'- aGCUGaucgcGACCguGGCccCCUcCGGGAUCCc -3'
miRNA:   3'- gCGACa----CUGG--CCGaaGGA-GCCCUAGG- -5'
7307 5' -57.3 NC_001900.1 + 3686 0.69 0.410298
Target:  5'- uGCguucGACCaGC-UCCUCGGGGUCg -3'
miRNA:   3'- gCGaca-CUGGcCGaAGGAGCCCUAGg -5'
7307 5' -57.3 NC_001900.1 + 6613 0.69 0.401175
Target:  5'- gGCUGUaGGCCGGUUggaugCCgUUGaGGAUCUg -3'
miRNA:   3'- gCGACA-CUGGCCGAa----GG-AGC-CCUAGG- -5'
7307 5' -57.3 NC_001900.1 + 28010 0.7 0.34841
Target:  5'- ---aGUcGACCGGacugggacgaguaCUUCCUCGGGAUCg -3'
miRNA:   3'- gcgaCA-CUGGCC-------------GAAGGAGCCCUAGg -5'
7307 5' -57.3 NC_001900.1 + 28393 0.72 0.28773
Target:  5'- aGCUGUGGCuCGGCUcauUCCacCGGGAg-- -3'
miRNA:   3'- gCGACACUG-GCCGA---AGGa-GCCCUagg -5'
7307 5' -57.3 NC_001900.1 + 34038 0.72 0.266965
Target:  5'- gCGCUucuUGACCGGCa--C-CGGGAUCCg -3'
miRNA:   3'- -GCGAc--ACUGGCCGaagGaGCCCUAGG- -5'
7307 5' -57.3 NC_001900.1 + 18375 1.13 0.000331
Target:  5'- aCGCUGUGACCGGCUUCCUCGGGAUCCa -3'
miRNA:   3'- -GCGACACUGGCCGAAGGAGCCCUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.