miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7308 3' -51.3 NC_001900.1 + 23009 0.66 0.901512
Target:  5'- aCGGUCuccAGGGCgCucgucAGACCGuugACCAGa -3'
miRNA:   3'- aGCCAG---UUCUG-Gu----UCUGGCua-UGGUC- -5'
7308 3' -51.3 NC_001900.1 + 34021 0.66 0.89867
Target:  5'- cCuGUCGGGGCCAccgugcgcuucuuGACCGGcACCGGg -3'
miRNA:   3'- aGcCAGUUCUGGUu------------CUGGCUaUGGUC- -5'
7308 3' -51.3 NC_001900.1 + 21381 0.66 0.894322
Target:  5'- gCGGguUCAGGACCGcauccaucAGACCGc--CCAGc -3'
miRNA:   3'- aGCC--AGUUCUGGU--------UCUGGCuauGGUC- -5'
7308 3' -51.3 NC_001900.1 + 44918 0.66 0.894322
Target:  5'- aCGGUgGAGACCGcguuGACCGGcaaCGGc -3'
miRNA:   3'- aGCCAgUUCUGGUu---CUGGCUaugGUC- -5'
7308 3' -51.3 NC_001900.1 + 18335 0.66 0.894322
Target:  5'- gCGGUgagCAAGGCCAAGgaACUG--GCCAGc -3'
miRNA:   3'- aGCCA---GUUCUGGUUC--UGGCuaUGGUC- -5'
7308 3' -51.3 NC_001900.1 + 35765 0.66 0.889872
Target:  5'- -aGGUCAucguccagcgcgacgAGACCAAGuACCcc-GCCAGa -3'
miRNA:   3'- agCCAGU---------------UCUGGUUC-UGGcuaUGGUC- -5'
7308 3' -51.3 NC_001900.1 + 23316 0.66 0.886849
Target:  5'- gCGGUCGgccccggcuGGGCCGAGuuCuAUACCGGc -3'
miRNA:   3'- aGCCAGU---------UCUGGUUCugGcUAUGGUC- -5'
7308 3' -51.3 NC_001900.1 + 13934 0.66 0.886849
Target:  5'- uUCGGgguAGACgAGcaccGGCUGGUACCGGg -3'
miRNA:   3'- -AGCCaguUCUGgUU----CUGGCUAUGGUC- -5'
7308 3' -51.3 NC_001900.1 + 3373 0.66 0.886849
Target:  5'- -gGGUCGAggugggggaucGACCAGcggaagucgcGGCCGGUgACCAGg -3'
miRNA:   3'- agCCAGUU-----------CUGGUU----------CUGGCUA-UGGUC- -5'
7308 3' -51.3 NC_001900.1 + 19562 0.67 0.862794
Target:  5'- cUUGGUCuuGACCGAGAacacUCGGUcguccucguACCAGa -3'
miRNA:   3'- -AGCCAGuuCUGGUUCU----GGCUA---------UGGUC- -5'
7308 3' -51.3 NC_001900.1 + 31618 0.67 0.862794
Target:  5'- cCGGUUcGGGCC--GACCGGaGCCAa -3'
miRNA:   3'- aGCCAGuUCUGGuuCUGGCUaUGGUc -5'
7308 3' -51.3 NC_001900.1 + 17008 0.67 0.862794
Target:  5'- aCGGcaUCAAGgcggcaGCCGAGACCauGAUGCCc- -3'
miRNA:   3'- aGCC--AGUUC------UGGUUCUGG--CUAUGGuc -5'
7308 3' -51.3 NC_001900.1 + 44375 0.67 0.862794
Target:  5'- uUCGaGUcCGGGACUAcaAGACCGGgaaccaACCGGg -3'
miRNA:   3'- -AGC-CA-GUUCUGGU--UCUGGCUa-----UGGUC- -5'
7308 3' -51.3 NC_001900.1 + 36447 0.67 0.854253
Target:  5'- cUCGGcCAAGGCCAGgGAUCucuuCCAGg -3'
miRNA:   3'- -AGCCaGUUCUGGUU-CUGGcuauGGUC- -5'
7308 3' -51.3 NC_001900.1 + 21285 0.67 0.854253
Target:  5'- -aGGUCAgcAGAUCGccACCGAUguucACCAGg -3'
miRNA:   3'- agCCAGU--UCUGGUucUGGCUA----UGGUC- -5'
7308 3' -51.3 NC_001900.1 + 41184 0.67 0.854253
Target:  5'- cUCGGgugaUCGAGACCAAGGuCCacgGCCGc -3'
miRNA:   3'- -AGCC----AGUUCUGGUUCU-GGcuaUGGUc -5'
7308 3' -51.3 NC_001900.1 + 1930 0.67 0.845465
Target:  5'- uUCGGauUCGcccgcAGGCCGAGGCCGucacCCGGc -3'
miRNA:   3'- -AGCC--AGU-----UCUGGUUCUGGCuau-GGUC- -5'
7308 3' -51.3 NC_001900.1 + 4007 0.67 0.845465
Target:  5'- gUGGUCGAG-CCAggcaaGGACCGccugACCAu -3'
miRNA:   3'- aGCCAGUUCuGGU-----UCUGGCua--UGGUc -5'
7308 3' -51.3 NC_001900.1 + 12516 0.67 0.845465
Target:  5'- aUCGGUCAgaccaccaAGGCCAucucGAuugcugacaccaCCGGUGCCAc -3'
miRNA:   3'- -AGCCAGU--------UCUGGUu---CU------------GGCUAUGGUc -5'
7308 3' -51.3 NC_001900.1 + 13696 0.67 0.845465
Target:  5'- gCGGUCAcaccuGACCAAG-UCGAcGCCGc -3'
miRNA:   3'- aGCCAGUu----CUGGUUCuGGCUaUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.