miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7309 3' -52.6 NC_001900.1 + 21417 0.66 0.841835
Target:  5'- gACAUCGuCACCGGccUGGGCgacUUCCa -3'
miRNA:   3'- aUGUAGC-GUGGCUucACCUGgc-AAGG- -5'
7309 3' -52.6 NC_001900.1 + 35109 0.66 0.832781
Target:  5'- -uCGUCGCAgaCGAuGUGGACU--UCCa -3'
miRNA:   3'- auGUAGCGUg-GCUuCACCUGGcaAGG- -5'
7309 3' -52.6 NC_001900.1 + 2592 0.66 0.832781
Target:  5'- gGCAgaUCGCuugcagguuagACCGcGAGUGG-UCGUUCCc -3'
miRNA:   3'- aUGU--AGCG-----------UGGC-UUCACCuGGCAAGG- -5'
7309 3' -52.6 NC_001900.1 + 34661 0.66 0.823506
Target:  5'- aACAUCucCGUCGAGGUGGACgaugCGUUCUg -3'
miRNA:   3'- aUGUAGc-GUGGCUUCACCUG----GCAAGG- -5'
7309 3' -52.6 NC_001900.1 + 22317 0.66 0.823506
Target:  5'- -cCAUCGCuggGCCGggGcGG-UCGUUCUu -3'
miRNA:   3'- auGUAGCG---UGGCuuCaCCuGGCAAGG- -5'
7309 3' -52.6 NC_001900.1 + 42253 0.66 0.823506
Target:  5'- aACGUcCGCACCGAgucGGgGGAcggggaugacCCGUUCa -3'
miRNA:   3'- aUGUA-GCGUGGCU---UCaCCU----------GGCAAGg -5'
7309 3' -52.6 NC_001900.1 + 36874 0.66 0.814019
Target:  5'- -cCGUUGCACCcuuGAGGUacuGGGCCaGUUUCa -3'
miRNA:   3'- auGUAGCGUGG---CUUCA---CCUGG-CAAGG- -5'
7309 3' -52.6 NC_001900.1 + 9133 0.66 0.814019
Target:  5'- cGCA-CGgGCCGGguGGUGG-CCG-UCCg -3'
miRNA:   3'- aUGUaGCgUGGCU--UCACCuGGCaAGG- -5'
7309 3' -52.6 NC_001900.1 + 44241 0.66 0.804332
Target:  5'- gGCAagGCACCGAAGccGACCaagCCc -3'
miRNA:   3'- aUGUagCGUGGCUUCacCUGGcaaGG- -5'
7309 3' -52.6 NC_001900.1 + 3029 0.67 0.763807
Target:  5'- -uCAUCGCACCGA--UGGGCUug-CCc -3'
miRNA:   3'- auGUAGCGUGGCUucACCUGGcaaGG- -5'
7309 3' -52.6 NC_001900.1 + 39779 0.68 0.721014
Target:  5'- -uCAUCGCGCUGGcucuGcUGGAuCUGUUCCc -3'
miRNA:   3'- auGUAGCGUGGCUu---C-ACCU-GGCAAGG- -5'
7309 3' -52.6 NC_001900.1 + 38044 0.69 0.630622
Target:  5'- cUACAcCGCAUCGGAGaccGGACUGUgagugaaUCCa -3'
miRNA:   3'- -AUGUaGCGUGGCUUCa--CCUGGCA-------AGG- -5'
7309 3' -52.6 NC_001900.1 + 43556 0.72 0.499202
Target:  5'- gGCggCGCACCGAGcUGGccgGCCGaUCCa -3'
miRNA:   3'- aUGuaGCGUGGCUUcACC---UGGCaAGG- -5'
7309 3' -52.6 NC_001900.1 + 24032 0.72 0.488638
Target:  5'- gACGaCGCcgguuUCGAGGUGGACCGagCCg -3'
miRNA:   3'- aUGUaGCGu----GGCUUCACCUGGCaaGG- -5'
7309 3' -52.6 NC_001900.1 + 13049 0.74 0.37141
Target:  5'- gACAUC-CACCgGGAGgGGGCCGUUCa -3'
miRNA:   3'- aUGUAGcGUGG-CUUCaCCUGGCAAGg -5'
7309 3' -52.6 NC_001900.1 + 22113 0.75 0.353816
Target:  5'- aACAaCGCAgCGAGGUGGGCCGa--- -3'
miRNA:   3'- aUGUaGCGUgGCUUCACCUGGCaagg -5'
7309 3' -52.6 NC_001900.1 + 19634 1.1 0.001504
Target:  5'- gUACAUCGCACCGAAGUGGACCGUUCCc -3'
miRNA:   3'- -AUGUAGCGUGGCUUCACCUGGCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.