miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7310 3' -54.1 NC_001900.1 + 27966 0.66 0.780436
Target:  5'- aGCGGCcc-AGCgAUCGGACuGUgaaaGGAGCa -3'
miRNA:   3'- -CGCUGacuUCGgUGGCCUG-CA----UCUCG- -5'
7310 3' -54.1 NC_001900.1 + 30365 0.66 0.780436
Target:  5'- cGCGACcgagGAuGUCGCgGaGGCGUucgaGGAGCu -3'
miRNA:   3'- -CGCUGa---CUuCGGUGgC-CUGCA----UCUCG- -5'
7310 3' -54.1 NC_001900.1 + 44993 0.66 0.780436
Target:  5'- -aGGCUGAGGCCACaCaGuuuCGUuGAGUc -3'
miRNA:   3'- cgCUGACUUCGGUG-GcCu--GCAuCUCG- -5'
7310 3' -54.1 NC_001900.1 + 25388 0.66 0.777416
Target:  5'- gGCuGCUGAGGCCAuCUGGuacuucaucgccauGCGcGGAGUc -3'
miRNA:   3'- -CGcUGACUUCGGU-GGCC--------------UGCaUCUCG- -5'
7310 3' -54.1 NC_001900.1 + 9585 0.66 0.774382
Target:  5'- gGCGGCUGAucgugauguacgaccGGCCgu-GGACGUA-AGCg -3'
miRNA:   3'- -CGCUGACU---------------UCGGuggCCUGCAUcUCG- -5'
7310 3' -54.1 NC_001900.1 + 41970 0.66 0.770317
Target:  5'- -gGGCcGAAGCCGuCCGacucGCGaUGGAGCg -3'
miRNA:   3'- cgCUGaCUUCGGU-GGCc---UGC-AUCUCG- -5'
7310 3' -54.1 NC_001900.1 + 9287 0.66 0.760052
Target:  5'- cCGACcaGAGGCCAUCGG-CGUcacGGuGCc -3'
miRNA:   3'- cGCUGa-CUUCGGUGGCCuGCA---UCuCG- -5'
7310 3' -54.1 NC_001900.1 + 31181 0.66 0.760052
Target:  5'- aGUGACUGugucCCugUGGACGauuGGGCc -3'
miRNA:   3'- -CGCUGACuuc-GGugGCCUGCau-CUCG- -5'
7310 3' -54.1 NC_001900.1 + 30546 0.66 0.749655
Target:  5'- cCGACgUGAgccGGCCGuuGGugcCGUAcGAGCa -3'
miRNA:   3'- cGCUG-ACU---UCGGUggCCu--GCAU-CUCG- -5'
7310 3' -54.1 NC_001900.1 + 47971 0.66 0.749655
Target:  5'- uUGACUuGAcAGCUACCGGAagggGU-GAGCu -3'
miRNA:   3'- cGCUGA-CU-UCGGUGGCCUg---CAuCUCG- -5'
7310 3' -54.1 NC_001900.1 + 29653 0.66 0.739135
Target:  5'- gGCGGCUGccgguGGaCCGCucuCGGACGUAcucGGCg -3'
miRNA:   3'- -CGCUGACu----UC-GGUG---GCCUGCAUc--UCG- -5'
7310 3' -54.1 NC_001900.1 + 9905 0.67 0.706967
Target:  5'- gGCGACUGcgGAGCUGauGGGCGUGccccAGCg -3'
miRNA:   3'- -CGCUGAC--UUCGGUggCCUGCAUc---UCG- -5'
7310 3' -54.1 NC_001900.1 + 25532 0.67 0.69608
Target:  5'- gGCGGCUcAGGCCGgUGcGACGaccaaGGAGCu -3'
miRNA:   3'- -CGCUGAcUUCGGUgGC-CUGCa----UCUCG- -5'
7310 3' -54.1 NC_001900.1 + 753 0.67 0.69608
Target:  5'- -aGGCUGAA---AUCGGGCGUcAGAGCa -3'
miRNA:   3'- cgCUGACUUcggUGGCCUGCA-UCUCG- -5'
7310 3' -54.1 NC_001900.1 + 15486 0.67 0.685129
Target:  5'- cGCGACgGAcaccGGcCUugUGGGCGUGGuGGCc -3'
miRNA:   3'- -CGCUGaCU----UC-GGugGCCUGCAUC-UCG- -5'
7310 3' -54.1 NC_001900.1 + 11048 0.67 0.685129
Target:  5'- gGCGAggGucGCCACCGGGCGcgaaacauGCg -3'
miRNA:   3'- -CGCUgaCuuCGGUGGCCUGCaucu----CG- -5'
7310 3' -54.1 NC_001900.1 + 23629 0.68 0.674127
Target:  5'- uUGACgcgcAGCCacaACCGGAUGUGuGAGCc -3'
miRNA:   3'- cGCUGacu-UCGG---UGGCCUGCAU-CUCG- -5'
7310 3' -54.1 NC_001900.1 + 17275 0.68 0.674127
Target:  5'- aGCuGCUGGAGCC-CCGGACccu--GCg -3'
miRNA:   3'- -CGcUGACUUCGGuGGCCUGcaucuCG- -5'
7310 3' -54.1 NC_001900.1 + 33082 0.68 0.663085
Target:  5'- aGCaGGCgcagGAAGCCcCUGGcgGCGaAGAGCg -3'
miRNA:   3'- -CG-CUGa---CUUCGGuGGCC--UGCaUCUCG- -5'
7310 3' -54.1 NC_001900.1 + 5650 0.68 0.663085
Target:  5'- aGCGGgUGAA-CCACgaaguaguCGGGCGUGGGGa -3'
miRNA:   3'- -CGCUgACUUcGGUG--------GCCUGCAUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.