Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7310 | 3' | -54.1 | NC_001900.1 | + | 20117 | 1.14 | 0.000576 |
Target: 5'- aGCGACUGAAGCCACCGGACGUAGAGCu -3' miRNA: 3'- -CGCUGACUUCGGUGGCCUGCAUCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 31181 | 0.66 | 0.760052 |
Target: 5'- aGUGACUGugucCCugUGGACGauuGGGCc -3' miRNA: 3'- -CGCUGACuuc-GGugGCCUGCau-CUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 11048 | 0.67 | 0.685129 |
Target: 5'- gGCGAggGucGCCACCGGGCGcgaaacauGCg -3' miRNA: 3'- -CGCUgaCuuCGGUGGCCUGCaucu----CG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 19104 | 0.68 | 0.629825 |
Target: 5'- gGCGugUuccuGGCCACa-GACGUGGAGg -3' miRNA: 3'- -CGCugAcu--UCGGUGgcCUGCAUCUCg -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 15539 | 0.69 | 0.574558 |
Target: 5'- -gGAuCUGuucGGCCucucGCCGGGCGgUGGAGCc -3' miRNA: 3'- cgCU-GACu--UCGG----UGGCCUGC-AUCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 10177 | 0.7 | 0.552725 |
Target: 5'- --cGCUGAGGCCAUCaGGGCcgcagAGAGCc -3' miRNA: 3'- cgcUGACUUCGGUGG-CCUGca---UCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 25388 | 0.66 | 0.777416 |
Target: 5'- gGCuGCUGAGGCCAuCUGGuacuucaucgccauGCGcGGAGUc -3' miRNA: 3'- -CGcUGACUUCGGU-GGCC--------------UGCaUCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 9287 | 0.66 | 0.760052 |
Target: 5'- cCGACcaGAGGCCAUCGG-CGUcacGGuGCc -3' miRNA: 3'- cGCUGa-CUUCGGUGGCCuGCA---UCuCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 23636 | 0.68 | 0.618729 |
Target: 5'- cGCGAaccucgcgcagUUG-GGCUACCGG-CGUAGAGg -3' miRNA: 3'- -CGCU-----------GACuUCGGUGGCCuGCAUCUCg -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 45415 | 0.7 | 0.541901 |
Target: 5'- aCGuacCUGAAGCCuccaccggccauGCCGGG-GUAGGGCu -3' miRNA: 3'- cGCu--GACUUCGG------------UGGCCUgCAUCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 1173 | 0.82 | 0.101096 |
Target: 5'- gGCGGCggUGGAGCCGCCGGaaGCGgccGGGGCg -3' miRNA: 3'- -CGCUG--ACUUCGGUGGCC--UGCa--UCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 15103 | 0.81 | 0.110127 |
Target: 5'- -gGACUGGAGCCACCGGcUGgucGAGCg -3' miRNA: 3'- cgCUGACUUCGGUGGCCuGCau-CUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 9905 | 0.67 | 0.706967 |
Target: 5'- gGCGACUGcgGAGCUGauGGGCGUGccccAGCg -3' miRNA: 3'- -CGCUGAC--UUCGGUggCCUGCAUc---UCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 41970 | 0.66 | 0.770317 |
Target: 5'- -gGGCcGAAGCCGuCCGacucGCGaUGGAGCg -3' miRNA: 3'- cgCUGaCUUCGGU-GGCc---UGC-AUCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 8029 | 0.69 | 0.596582 |
Target: 5'- uCGAUgc-GGCCACCGGcCGcGGAGUa -3' miRNA: 3'- cGCUGacuUCGGUGGCCuGCaUCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 33082 | 0.68 | 0.663085 |
Target: 5'- aGCaGGCgcagGAAGCCcCUGGcgGCGaAGAGCg -3' miRNA: 3'- -CG-CUGa---CUUCGGuGGCC--UGCaUCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 5650 | 0.68 | 0.663085 |
Target: 5'- aGCGGgUGAA-CCACgaaguaguCGGGCGUGGGGa -3' miRNA: 3'- -CGCUgACUUcGGUG--------GCCUGCAUCUCg -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 17275 | 0.68 | 0.674127 |
Target: 5'- aGCuGCUGGAGCC-CCGGACccu--GCg -3' miRNA: 3'- -CGcUGACUUCGGuGGCCUGcaucuCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 44993 | 0.66 | 0.780436 |
Target: 5'- -aGGCUGAGGCCACaCaGuuuCGUuGAGUc -3' miRNA: 3'- cgCUGACUUCGGUG-GcCu--GCAuCUCG- -5' |
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7310 | 3' | -54.1 | NC_001900.1 | + | 29653 | 0.66 | 0.739135 |
Target: 5'- gGCGGCUGccgguGGaCCGCucuCGGACGUAcucGGCg -3' miRNA: 3'- -CGCUGACu----UC-GGUG---GCCUGCAUc--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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