miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7312 5' -53.1 NC_001900.1 + 40118 0.66 0.760564
Target:  5'- -uGUCguGGUgUUCCUGGCCAGCAGccgCGu -3'
miRNA:   3'- guCAG--UCG-AAGGACUGGUCGUCua-GU- -5'
7312 5' -53.1 NC_001900.1 + 49059 0.67 0.728049
Target:  5'- cCAGgggCGcCUUCCUGACCGGUcGGUUA -3'
miRNA:   3'- -GUCa--GUcGAAGGACUGGUCGuCUAGU -5'
7312 5' -53.1 NC_001900.1 + 32738 0.67 0.728049
Target:  5'- gUAGUCGGUg-CCUGcCCAGCucGGGUCu -3'
miRNA:   3'- -GUCAGUCGaaGGACuGGUCG--UCUAGu -5'
7312 5' -53.1 NC_001900.1 + 34023 0.67 0.716986
Target:  5'- -uGUCGgggccaccgugcGCUUCUUGACCGGCaccgGGAUCc -3'
miRNA:   3'- guCAGU------------CGAAGGACUGGUCG----UCUAGu -5'
7312 5' -53.1 NC_001900.1 + 12271 0.68 0.660566
Target:  5'- gGGUCGGCgaCgUGAgugcCCAGUGGAUCGg -3'
miRNA:   3'- gUCAGUCGaaGgACU----GGUCGUCUAGU- -5'
7312 5' -53.1 NC_001900.1 + 5476 0.68 0.649147
Target:  5'- aCGGUCGGC-UCUacaagGGCCGGUccuGGAUCAu -3'
miRNA:   3'- -GUCAGUCGaAGGa----CUGGUCG---UCUAGU- -5'
7312 5' -53.1 NC_001900.1 + 6510 0.68 0.637712
Target:  5'- cCAGcUCGGCccgCUGGCCAGcCAGAUCc -3'
miRNA:   3'- -GUC-AGUCGaagGACUGGUC-GUCUAGu -5'
7312 5' -53.1 NC_001900.1 + 1609 0.71 0.48155
Target:  5'- aGGUCGGCUUCUcGGCCGGUGGcgacacccccgGUCAg -3'
miRNA:   3'- gUCAGUCGAAGGaCUGGUCGUC-----------UAGU- -5'
7312 5' -53.1 NC_001900.1 + 18171 0.74 0.312922
Target:  5'- gGGUCGGC-UCCUGGuCCAGCGGugugCAg -3'
miRNA:   3'- gUCAGUCGaAGGACU-GGUCGUCua--GU- -5'
7312 5' -53.1 NC_001900.1 + 21151 0.76 0.233998
Target:  5'- ---cCAGCUUCCUGGCCGGUGGA-CAg -3'
miRNA:   3'- gucaGUCGAAGGACUGGUCGUCUaGU- -5'
7312 5' -53.1 NC_001900.1 + 22048 1.09 0.001266
Target:  5'- uCAGUCAGCUUCCUGACCAGCAGAUCAa -3'
miRNA:   3'- -GUCAGUCGAAGGACUGGUCGUCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.