Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7313 | 3' | -63.3 | NC_001900.1 | + | 40381 | 0.66 | 0.347849 |
|
Target: 5'- aCCaCGGCCgCAGCGGcucacuGCCGAccggccacacGGUCGa -3' miRNA: 3'- gGG-GCCGG-GUCGCUac----CGGCU----------CCAGC- -5' |
|||||||
| 7313 | 3' | -63.3 | NC_001900.1 | + | 43211 | 0.66 | 0.347849 |
|
Target: 5'- uCCCaCaGCUCcGCGA-GGUgGAGGUCGu -3' miRNA: 3'- -GGG-GcCGGGuCGCUaCCGgCUCCAGC- -5' |
|||||||
| 7313 | 3' | -63.3 | NC_001900.1 | + | 43255 | 0.69 | 0.220965 |
|
Target: 5'- gUCUCGGUCCuccgcuaccuuGGCG-UGGCCGAuguguaGGUCGg -3' miRNA: 3'- -GGGGCCGGG-----------UCGCuACCGGCU------CCAGC- -5' |
|||||||
| 7313 | 3' | -63.3 | NC_001900.1 | + | 46557 | 0.66 | 0.317322 |
|
Target: 5'- uCCCCaGCUCguuGGCGAUGGCUu-GGUgGg -3' miRNA: 3'- -GGGGcCGGG---UCGCUACCGGcuCCAgC- -5' |
|||||||
| 7313 | 3' | -63.3 | NC_001900.1 | + | 47578 | 0.73 | 0.112764 |
|
Target: 5'- gUCUCaGGCCCAGCGAcguuucgucGGCCGGGGguggCGa -3' miRNA: 3'- -GGGG-CCGGGUCGCUa--------CCGGCUCCa---GC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home