Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7313 | 5' | -53.4 | NC_001900.1 | + | 4931 | 0.67 | 0.719663 |
|
Target: 5'- -aCGACCUCGGguucaggcgacuCCCUccGGGAGGCg -3' miRNA: 3'- aaGUUGGGGCUauu---------GGGAa-CCCUCUG- -5' |
|||||||
| 7313 | 5' | -53.4 | NC_001900.1 | + | 42758 | 0.67 | 0.715237 |
|
Target: 5'- gUCAuCCCCGGUuggauGCUCc-GGGAGAUg -3' miRNA: 3'- aAGUuGGGGCUAu----UGGGaaCCCUCUG- -5' |
|||||||
| 7313 | 5' | -53.4 | NC_001900.1 | + | 6471 | 0.67 | 0.704112 |
|
Target: 5'- cUCGAcgcCCCUGGUGACCUgauccaccgGGGAGGu -3' miRNA: 3'- aAGUU---GGGGCUAUUGGGaa-------CCCUCUg -5' |
|||||||
| 7313 | 5' | -53.4 | NC_001900.1 | + | 32824 | 0.67 | 0.692911 |
|
Target: 5'- -aCGAUCCuCGAaGACCCgagcUGGGcAGGCa -3' miRNA: 3'- aaGUUGGG-GCUaUUGGGa---ACCC-UCUG- -5' |
|||||||
| 7313 | 5' | -53.4 | NC_001900.1 | + | 34515 | 0.7 | 0.480697 |
|
Target: 5'- cUUCAGCaCCCGGUGugCCUUcGuGGAGcGCg -3' miRNA: 3'- -AAGUUG-GGGCUAUugGGAA-C-CCUC-UG- -5' |
|||||||
| 7313 | 5' | -53.4 | NC_001900.1 | + | 7475 | 0.72 | 0.409918 |
|
Target: 5'- --gGAUCCCaaGAUGACCCUUGGauGGGGCg -3' miRNA: 3'- aagUUGGGG--CUAUUGGGAACC--CUCUG- -5' |
|||||||
| 7313 | 5' | -53.4 | NC_001900.1 | + | 10245 | 0.73 | 0.363509 |
|
Target: 5'- -gCGGCCCUGAUGGCCUcaGcGGAGGCc -3' miRNA: 3'- aaGUUGGGGCUAUUGGGaaC-CCUCUG- -5' |
|||||||
| 7313 | 5' | -53.4 | NC_001900.1 | + | 22294 | 1.08 | 0.001252 |
|
Target: 5'- aUUCAACCCCGAUAACCCUUGGGAGACa -3' miRNA: 3'- -AAGUUGGGGCUAUUGGGAACCCUCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home