miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7313 5' -53.4 NC_001900.1 + 4931 0.67 0.719663
Target:  5'- -aCGACCUCGGguucaggcgacuCCCUccGGGAGGCg -3'
miRNA:   3'- aaGUUGGGGCUauu---------GGGAa-CCCUCUG- -5'
7313 5' -53.4 NC_001900.1 + 42758 0.67 0.715237
Target:  5'- gUCAuCCCCGGUuggauGCUCc-GGGAGAUg -3'
miRNA:   3'- aAGUuGGGGCUAu----UGGGaaCCCUCUG- -5'
7313 5' -53.4 NC_001900.1 + 6471 0.67 0.704112
Target:  5'- cUCGAcgcCCCUGGUGACCUgauccaccgGGGAGGu -3'
miRNA:   3'- aAGUU---GGGGCUAUUGGGaa-------CCCUCUg -5'
7313 5' -53.4 NC_001900.1 + 32824 0.67 0.692911
Target:  5'- -aCGAUCCuCGAaGACCCgagcUGGGcAGGCa -3'
miRNA:   3'- aaGUUGGG-GCUaUUGGGa---ACCC-UCUG- -5'
7313 5' -53.4 NC_001900.1 + 34515 0.7 0.480697
Target:  5'- cUUCAGCaCCCGGUGugCCUUcGuGGAGcGCg -3'
miRNA:   3'- -AAGUUG-GGGCUAUugGGAA-C-CCUC-UG- -5'
7313 5' -53.4 NC_001900.1 + 7475 0.72 0.409918
Target:  5'- --gGAUCCCaaGAUGACCCUUGGauGGGGCg -3'
miRNA:   3'- aagUUGGGG--CUAUUGGGAACC--CUCUG- -5'
7313 5' -53.4 NC_001900.1 + 10245 0.73 0.363509
Target:  5'- -gCGGCCCUGAUGGCCUcaGcGGAGGCc -3'
miRNA:   3'- aaGUUGGGGCUAUUGGGaaC-CCUCUG- -5'
7313 5' -53.4 NC_001900.1 + 22294 1.08 0.001252
Target:  5'- aUUCAACCCCGAUAACCCUUGGGAGACa -3'
miRNA:   3'- -AAGUUGGGGCUAUUGGGAACCCUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.