miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7314 5' -51.4 NC_001900.1 + 28291 0.66 0.88685
Target:  5'- --aCGAGGccGUCCGCaAGGACGaggCCa -3'
miRNA:   3'- caaGUUUCucCAGGCGcUCCUGUa--GG- -5'
7314 5' -51.4 NC_001900.1 + 14263 0.66 0.886849
Target:  5'- -gUCAAGGAGGa--GCGAGacGGCGUCa -3'
miRNA:   3'- caAGUUUCUCCaggCGCUC--CUGUAGg -5'
7314 5' -51.4 NC_001900.1 + 29952 0.66 0.875923
Target:  5'- -aUCGAGGccaugacgugaccgGGGUCaGCGAGGAagcaccgacgcacCGUCCa -3'
miRNA:   3'- caAGUUUC--------------UCCAGgCGCUCCU-------------GUAGG- -5'
7314 5' -51.4 NC_001900.1 + 25947 0.66 0.871079
Target:  5'- --cCGGGGAGGUguucgagcacuaCCGCGuGGcCGUCUa -3'
miRNA:   3'- caaGUUUCUCCA------------GGCGCuCCuGUAGG- -5'
7314 5' -51.4 NC_001900.1 + 47932 0.66 0.862795
Target:  5'- cUUCAccGAGcaCCGCGAGGuucGCGUCa -3'
miRNA:   3'- cAAGUuuCUCcaGGCGCUCC---UGUAGg -5'
7314 5' -51.4 NC_001900.1 + 7095 0.67 0.836439
Target:  5'- uUUCGAGccGGUCCuCGAGGAU-UCCg -3'
miRNA:   3'- cAAGUUUcuCCAGGcGCUCCUGuAGG- -5'
7314 5' -51.4 NC_001900.1 + 41479 0.67 0.827183
Target:  5'- --cCAAGGGGGUUggggGCGcAGGGCGUCa -3'
miRNA:   3'- caaGUUUCUCCAGg---CGC-UCCUGUAGg -5'
7314 5' -51.4 NC_001900.1 + 8319 0.67 0.827182
Target:  5'- --cCGAcGGGuUCCGgGAGGGCAUCg -3'
miRNA:   3'- caaGUUuCUCcAGGCgCUCCUGUAGg -5'
7314 5' -51.4 NC_001900.1 + 20798 0.67 0.827182
Target:  5'- cGUUCGAugaccugaAG-GGUCUGUG-GGGCAUCg -3'
miRNA:   3'- -CAAGUU--------UCuCCAGGCGCuCCUGUAGg -5'
7314 5' -51.4 NC_001900.1 + 31646 0.67 0.817709
Target:  5'- --cCGAGcguGAGGUCCG---GGACAUCCg -3'
miRNA:   3'- caaGUUU---CUCCAGGCgcuCCUGUAGG- -5'
7314 5' -51.4 NC_001900.1 + 16358 0.67 0.817709
Target:  5'- -gUCGuAGAuGUCCGCGAGcGCGUaCCg -3'
miRNA:   3'- caAGUuUCUcCAGGCGCUCcUGUA-GG- -5'
7314 5' -51.4 NC_001900.1 + 45916 0.67 0.817708
Target:  5'- cUUCGAu--GG-CCGCGAGGAUcucgcgGUCCu -3'
miRNA:   3'- cAAGUUucuCCaGGCGCUCCUG------UAGG- -5'
7314 5' -51.4 NC_001900.1 + 35224 0.68 0.798149
Target:  5'- aUUCGAAGuGGUCCG--AGGGCuucucgGUCCa -3'
miRNA:   3'- cAAGUUUCuCCAGGCgcUCCUG------UAGG- -5'
7314 5' -51.4 NC_001900.1 + 10486 0.68 0.77785
Target:  5'- ---gGAAGAGG-CCGCGAuGGGCcUCg -3'
miRNA:   3'- caagUUUCUCCaGGCGCU-CCUGuAGg -5'
7314 5' -51.4 NC_001900.1 + 35083 0.68 0.767454
Target:  5'- cGUUCGugaucGAGGacucCCGCGAGGGCugggcagCCg -3'
miRNA:   3'- -CAAGUuu---CUCCa---GGCGCUCCUGua-----GG- -5'
7314 5' -51.4 NC_001900.1 + 40116 0.69 0.724511
Target:  5'- -cUCGGGGAGG-CCGUGAccGACAUCg -3'
miRNA:   3'- caAGUUUCUCCaGGCGCUc-CUGUAGg -5'
7314 5' -51.4 NC_001900.1 + 18800 0.7 0.691231
Target:  5'- cGUUCuu-GAugcGGUCCcucugguacGCGAGGAUGUCCu -3'
miRNA:   3'- -CAAGuuuCU---CCAGG---------CGCUCCUGUAGG- -5'
7314 5' -51.4 NC_001900.1 + 854 0.7 0.691231
Target:  5'- --cCGGAGGGGgccacggUCGCGAucagcucgauGGGCAUCCg -3'
miRNA:   3'- caaGUUUCUCCa------GGCGCU----------CCUGUAGG- -5'
7314 5' -51.4 NC_001900.1 + 18955 0.7 0.68
Target:  5'- -gUCGAucAGGaCCGCGAGGA-AUCCa -3'
miRNA:   3'- caAGUUucUCCaGGCGCUCCUgUAGG- -5'
7314 5' -51.4 NC_001900.1 + 27781 0.7 0.66872
Target:  5'- --cCAGAGA-GUCgGCGAGGGCAcguacugcaUCCu -3'
miRNA:   3'- caaGUUUCUcCAGgCGCUCCUGU---------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.