miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7315 3' -58.5 NC_001900.1 + 17839 0.66 0.4968
Target:  5'- uGGUCA-CCUCgCUCgGCccGUACCUGCc -3'
miRNA:   3'- -CUAGUgGGAG-GAGgCGcuCGUGGACG- -5'
7315 3' -58.5 NC_001900.1 + 23078 0.66 0.486611
Target:  5'- aGGUCGCCCUUgggguugaUGcCGAGgGCCUGCa -3'
miRNA:   3'- -CUAGUGGGAGgag-----GC-GCUCgUGGACG- -5'
7315 3' -58.5 NC_001900.1 + 20400 0.66 0.486611
Target:  5'- cAUCAUCC-CgCUCCauCGAGCGCCUuGCu -3'
miRNA:   3'- cUAGUGGGaG-GAGGc-GCUCGUGGA-CG- -5'
7315 3' -58.5 NC_001900.1 + 25225 0.67 0.466539
Target:  5'- ---gGCCCgagCCUCUGCGAGgCuggCUGCg -3'
miRNA:   3'- cuagUGGGa--GGAGGCGCUC-Gug-GACG- -5'
7315 3' -58.5 NC_001900.1 + 14441 0.68 0.409064
Target:  5'- --aCGCCCcguccgggUUCUUCGCGGGCACCg-- -3'
miRNA:   3'- cuaGUGGG--------AGGAGGCGCUCGUGGacg -5'
7315 3' -58.5 NC_001900.1 + 8903 0.68 0.390909
Target:  5'- -uUCGCgUUCgaCUGUGAGCGCCUGg -3'
miRNA:   3'- cuAGUGgGAGgaGGCGCUCGUGGACg -5'
7315 3' -58.5 NC_001900.1 + 9976 0.68 0.382031
Target:  5'- --aCGCCCaUCagCUCCGC-AGuCGCCUGCa -3'
miRNA:   3'- cuaGUGGG-AG--GAGGCGcUC-GUGGACG- -5'
7315 3' -58.5 NC_001900.1 + 3340 0.69 0.315976
Target:  5'- --cCACCC-CCUggcCUGCGGGCgACCUGUu -3'
miRNA:   3'- cuaGUGGGaGGA---GGCGCUCG-UGGACG- -5'
7315 3' -58.5 NC_001900.1 + 43789 0.7 0.272342
Target:  5'- cGGUCggGCCgCUCCUCgcUGUGAGCGCgaGCg -3'
miRNA:   3'- -CUAG--UGG-GAGGAG--GCGCUCGUGgaCG- -5'
7315 3' -58.5 NC_001900.1 + 6883 0.72 0.204541
Target:  5'- --aCAUCCUgCCUCCGaCGGGCAggcuccacagguuCCUGCa -3'
miRNA:   3'- cuaGUGGGA-GGAGGC-GCUCGU-------------GGACG- -5'
7315 3' -58.5 NC_001900.1 + 28683 0.74 0.165639
Target:  5'- ---uGCCCUCCUCgGCGAuGUACCaggGCa -3'
miRNA:   3'- cuagUGGGAGGAGgCGCU-CGUGGa--CG- -5'
7315 3' -58.5 NC_001900.1 + 6507 0.78 0.080642
Target:  5'- -cUCAgCCUCagcguucugcuuggCCGCGAGCACCUGCu -3'
miRNA:   3'- cuAGUgGGAGga------------GGCGCUCGUGGACG- -5'
7315 3' -58.5 NC_001900.1 + 22691 1.11 0.000284
Target:  5'- cGAUCACCCUCCUCCGCGAGCACCUGCu -3'
miRNA:   3'- -CUAGUGGGAGGAGGCGCUCGUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.