Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7316 | 3' | -59.4 | NC_001900.1 | + | 808 | 0.67 | 0.393709 |
Target: 5'- cCAGCGGCUGCgguagacguuccaGACCGcugcGGCCCGuGGc- -3' miRNA: 3'- -GUCGCCGACGa------------CUGGC----UUGGGC-CUcu -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 1011 | 0.69 | 0.292011 |
Target: 5'- -cGCGGUUGCUugcGAUCGAGgaguuCCUGGAGGc -3' miRNA: 3'- guCGCCGACGA---CUGGCUU-----GGGCCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 2215 | 0.68 | 0.354044 |
Target: 5'- aAGUGGggugGCUGGgaGGGCCUGGAGAu -3' miRNA: 3'- gUCGCCga--CGACUggCUUGGGCCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 3009 | 0.67 | 0.397292 |
Target: 5'- -cGCacuGCUGCUGACCGAAggcgaCCGGcGAc -3' miRNA: 3'- guCGc--CGACGACUGGCUUg----GGCCuCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 6581 | 0.69 | 0.314228 |
Target: 5'- uGGCuGGCcaGCgGGCCGAGCUgGGGGAc -3' miRNA: 3'- gUCG-CCGa-CGaCUGGCUUGGgCCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 13017 | 0.66 | 0.477097 |
Target: 5'- uCAGCGGCggcgGCgagGGCUGAGCcuaacuugacauccaCCgGGAGGg -3' miRNA: 3'- -GUCGCCGa---CGa--CUGGCUUG---------------GG-CCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 13453 | 0.71 | 0.226838 |
Target: 5'- -cGCGGUgcUGCgucugGugCGuAACCCGGAGGg -3' miRNA: 3'- guCGCCG--ACGa----CugGC-UUGGGCCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 16573 | 0.66 | 0.473113 |
Target: 5'- -cGUGaGCUGaaGACCGA-UCUGGAGAa -3' miRNA: 3'- guCGC-CGACgaCUGGCUuGGGCCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 22875 | 1.08 | 0.000373 |
Target: 5'- cCAGCGGCUGCUGACCGAACCCGGAGAg -3' miRNA: 3'- -GUCGCCGACGACUGGCUUGGGCCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 23002 | 0.67 | 0.40634 |
Target: 5'- cCAGgGcGCUcgucagaccGUUGACCaGAGCCUGGGGGa -3' miRNA: 3'- -GUCgC-CGA---------CGACUGG-CUUGGGCCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 23127 | 0.66 | 0.473113 |
Target: 5'- uGGuCGGCc-CUGACCGGgcgcaGCCCGGGcGAg -3' miRNA: 3'- gUC-GCCGacGACUGGCU-----UGGGCCU-CU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 26000 | 0.67 | 0.379589 |
Target: 5'- aCAGCGGUauucaUGACC--GCCCGGAGu -3' miRNA: 3'- -GUCGCCGacg--ACUGGcuUGGGCCUCu -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 29655 | 0.74 | 0.144418 |
Target: 5'- cCGGCGGCUGCcggugGACCGcuCUCGGAc- -3' miRNA: 3'- -GUCGCCGACGa----CUGGCuuGGGCCUcu -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 31790 | 0.67 | 0.379589 |
Target: 5'- aGGUGGCUGUgaACCaGAACCugcgguCGGAGAa -3' miRNA: 3'- gUCGCCGACGacUGG-CUUGG------GCCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 33156 | 0.69 | 0.321912 |
Target: 5'- uGGCGGCaGCaaGCCGAACuCCGGuGGc -3' miRNA: 3'- gUCGCCGaCGacUGGCUUG-GGCCuCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 34313 | 0.69 | 0.299277 |
Target: 5'- uCAGCGGUcGCUGAuCCGAagAgCCGaGAGGu -3' miRNA: 3'- -GUCGCCGaCGACU-GGCU--UgGGC-CUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 34834 | 0.69 | 0.306683 |
Target: 5'- aCGGCGGUgcGCUGACCGGuCUCgaugcgauGGAGAu -3' miRNA: 3'- -GUCGCCGa-CGACUGGCUuGGG--------CCUCU- -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 37081 | 0.67 | 0.424819 |
Target: 5'- aCGGUGGCcgUGCgucgaGAUCcAGCCCGGAGc -3' miRNA: 3'- -GUCGCCG--ACGa----CUGGcUUGGGCCUCu -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 39829 | 0.67 | 0.378718 |
Target: 5'- -cGaCGGCuuccacucauggaUGCUGGCUG-ACCCGGAGc -3' miRNA: 3'- guC-GCCG-------------ACGACUGGCuUGGGCCUCu -5' |
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7316 | 3' | -59.4 | NC_001900.1 | + | 40194 | 0.68 | 0.354044 |
Target: 5'- -cGCGGCUGCUGGCCagGAACaCCa---- -3' miRNA: 3'- guCGCCGACGACUGG--CUUG-GGccucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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