miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7316 5' -59.1 NC_001900.1 + 8610 0.68 0.361705
Target:  5'- gGUCCaaguCCAacgacuggacGGCUCUGGUCGGCugccgGGUCUc -3'
miRNA:   3'- -UAGGg---GGU----------CCGAGACCAGUUG-----CCAGA- -5'
7316 5' -59.1 NC_001900.1 + 10302 0.68 0.361705
Target:  5'- uUCCCCCGGacauGCUCcgcaUGGa-GACGGUCUg -3'
miRNA:   3'- uAGGGGGUC----CGAG----ACCagUUGCCAGA- -5'
7316 5' -59.1 NC_001900.1 + 12822 0.68 0.327916
Target:  5'- uUCUCCCAGcucaUCUGGggccagaUCGGCGGUCUg -3'
miRNA:   3'- uAGGGGGUCcg--AGACC-------AGUUGCCAGA- -5'
7316 5' -59.1 NC_001900.1 + 3152 0.7 0.269553
Target:  5'- gGUCCCCCuGGCgg-GGUUcugAGCGGUUg -3'
miRNA:   3'- -UAGGGGGuCCGagaCCAG---UUGCCAGa -5'
7316 5' -59.1 NC_001900.1 + 22914 1.06 0.000522
Target:  5'- gAUCCCCCAGGCUCUGGUCAACGGUCUg -3'
miRNA:   3'- -UAGGGGGUCCGAGACCAGUUGCCAGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.