miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7317 3' -58.7 NC_001900.1 + 28165 0.66 0.518372
Target:  5'- aGCCCUUGGUucuccagCAGCgCCuc-GGCGAg -3'
miRNA:   3'- -CGGGAGCCGua-----GUUGgGGuucCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 6728 0.66 0.508035
Target:  5'- uGCCguaUCGGCAggcaggcCAGgCCCGAGGG-GAu -3'
miRNA:   3'- -CGGg--AGCCGUa------GUUgGGGUUCCCgCU- -5'
7317 3' -58.7 NC_001900.1 + 35721 0.66 0.494729
Target:  5'- uGCCCUUcuucaCGUCGGCCuccgcuggccguagCCAGGGGUGAa -3'
miRNA:   3'- -CGGGAGcc---GUAGUUGG--------------GGUUCCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 14078 0.66 0.48763
Target:  5'- aUCCUCGGCGcUCAGaCCCAgaucgaguggaAGGGCc- -3'
miRNA:   3'- cGGGAGCCGU-AGUUgGGGU-----------UCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 26904 0.66 0.485611
Target:  5'- cGCCgUCGGCGgucuggccuUCAGCCUCAGuuucaccgcgcuGGCGAg -3'
miRNA:   3'- -CGGgAGCCGU---------AGUUGGGGUUc-----------CCGCU- -5'
7317 3' -58.7 NC_001900.1 + 23132 0.66 0.477573
Target:  5'- gGCCCUgaccgGGCG-CAGCCC---GGGCGAg -3'
miRNA:   3'- -CGGGAg----CCGUaGUUGGGguuCCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 32408 0.66 0.46762
Target:  5'- gGCCUugUCGGCGUCGgagcccgacaGCUCCGuaaacgccgGGGGCa- -3'
miRNA:   3'- -CGGG--AGCCGUAGU----------UGGGGU---------UCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 12303 0.67 0.448041
Target:  5'- gGCCCgUGGUacccAUCGGCaCCUucuGGGCGAa -3'
miRNA:   3'- -CGGGaGCCG----UAGUUG-GGGuu-CCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 2582 0.67 0.448041
Target:  5'- aGCCCgaCGGCGggaacUCAagGCCCgGAGGaaGCGAc -3'
miRNA:   3'- -CGGGa-GCCGU-----AGU--UGGGgUUCC--CGCU- -5'
7317 3' -58.7 NC_001900.1 + 37045 0.67 0.438423
Target:  5'- aCCCaccggcaaGGCAUCaAGCCCCAcaccuGGGGCu- -3'
miRNA:   3'- cGGGag------CCGUAG-UUGGGGU-----UCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 34080 0.67 0.438423
Target:  5'- cUCCUCGGCcgcucuGUCGACCUCAGcGGCc- -3'
miRNA:   3'- cGGGAGCCG------UAGUUGGGGUUcCCGcu -5'
7317 3' -58.7 NC_001900.1 + 11935 0.67 0.438423
Target:  5'- aGCCgguuucCGGUuUCGACCCCAcccAGGGCu- -3'
miRNA:   3'- -CGGga----GCCGuAGUUGGGGU---UCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 17235 0.67 0.428925
Target:  5'- aGCCCUUGGCGauguUCAcuAUgCCGGuGGCGAc -3'
miRNA:   3'- -CGGGAGCCGU----AGU--UGgGGUUcCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 38093 0.67 0.428925
Target:  5'- aGCCgaucaUCGGCuAUCAACCCgaCAAGGuCGAu -3'
miRNA:   3'- -CGGg----AGCCG-UAGUUGGG--GUUCCcGCU- -5'
7317 3' -58.7 NC_001900.1 + 23310 0.67 0.428925
Target:  5'- -aCCaCGGCgGUCGGCCCCGgcuGGGcCGAg -3'
miRNA:   3'- cgGGaGCCG-UAGUUGGGGUu--CCC-GCU- -5'
7317 3' -58.7 NC_001900.1 + 36184 0.67 0.428925
Target:  5'- -gCCUCGGCAgccgAACCCCucuccGGGaCGAc -3'
miRNA:   3'- cgGGAGCCGUag--UUGGGGuu---CCC-GCU- -5'
7317 3' -58.7 NC_001900.1 + 15141 0.67 0.428925
Target:  5'- aGCCga-GGCAcgcuccccgaguUCGGCUUCGAGGGCGGc -3'
miRNA:   3'- -CGGgagCCGU------------AGUUGGGGUUCCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 5446 0.67 0.419549
Target:  5'- -aCCUCGGCAaCAcCCCgGAGGuCGAc -3'
miRNA:   3'- cgGGAGCCGUaGUuGGGgUUCCcGCU- -5'
7317 3' -58.7 NC_001900.1 + 42238 0.68 0.374596
Target:  5'- aGUCCUCGuagagcGCGUCGuacGCUgCGAGGGCGu -3'
miRNA:   3'- -CGGGAGC------CGUAGU---UGGgGUUCCCGCu -5'
7317 3' -58.7 NC_001900.1 + 9942 0.68 0.366005
Target:  5'- aUCUUCGGCAUCAAgCCCGAagagaucGGCGu -3'
miRNA:   3'- cGGGAGCCGUAGUUgGGGUUc------CCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.