miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7317 3' -58.7 NC_001900.1 + 1711 0.76 0.107663
Target:  5'- aGUUCgaCGGCGUCAAgCCCAAGGGCa- -3'
miRNA:   3'- -CGGGa-GCCGUAGUUgGGGUUCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 2550 0.7 0.273749
Target:  5'- uGCCa-CGGCAagaagUCAGCCgCUGAGGGCGu -3'
miRNA:   3'- -CGGgaGCCGU-----AGUUGG-GGUUCCCGCu -5'
7317 3' -58.7 NC_001900.1 + 2582 0.67 0.448041
Target:  5'- aGCCCgaCGGCGggaacUCAagGCCCgGAGGaaGCGAc -3'
miRNA:   3'- -CGGGa-GCCGU-----AGU--UGGGgUUCC--CGCU- -5'
7317 3' -58.7 NC_001900.1 + 5446 0.67 0.419549
Target:  5'- -aCCUCGGCAaCAcCCCgGAGGuCGAc -3'
miRNA:   3'- cgGGAGCCGUaGUuGGGgUUCCcGCU- -5'
7317 3' -58.7 NC_001900.1 + 6232 0.72 0.206439
Target:  5'- aUCCUgGGCAUC-GCCCUgaucuGGGGCGGg -3'
miRNA:   3'- cGGGAgCCGUAGuUGGGGu----UCCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 6322 0.71 0.247428
Target:  5'- cGCCC---GCGUCGAUCCCGccccagaucAGGGCGAu -3'
miRNA:   3'- -CGGGagcCGUAGUUGGGGU---------UCCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 6728 0.66 0.508035
Target:  5'- uGCCguaUCGGCAggcaggcCAGgCCCGAGGG-GAu -3'
miRNA:   3'- -CGGg--AGCCGUa------GUUgGGGUUCCCgCU- -5'
7317 3' -58.7 NC_001900.1 + 9942 0.68 0.366005
Target:  5'- aUCUUCGGCAUCAAgCCCGAagagaucGGCGu -3'
miRNA:   3'- cGGGAGCCGUAGUUgGGGUUc------CCGCu -5'
7317 3' -58.7 NC_001900.1 + 10095 0.75 0.123672
Target:  5'- uGCCUUCGGCGUCcucgAACgCCAGgaugcGGGCGAg -3'
miRNA:   3'- -CGGGAGCCGUAG----UUGgGGUU-----CCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 11935 0.67 0.438423
Target:  5'- aGCCgguuucCGGUuUCGACCCCAcccAGGGCu- -3'
miRNA:   3'- -CGGga----GCCGuAGUUGGGGU---UCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 12303 0.67 0.448041
Target:  5'- gGCCCgUGGUacccAUCGGCaCCUucuGGGCGAa -3'
miRNA:   3'- -CGGGaGCCG----UAGUUG-GGGuu-CCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 14078 0.66 0.48763
Target:  5'- aUCCUCGGCGcUCAGaCCCAgaucgaguggaAGGGCc- -3'
miRNA:   3'- cGGGAGCCGU-AGUUgGGGU-----------UCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 15141 0.67 0.428925
Target:  5'- aGCCga-GGCAcgcuccccgaguUCGGCUUCGAGGGCGGc -3'
miRNA:   3'- -CGGgagCCGU------------AGUUGGGGUUCCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 17235 0.67 0.428925
Target:  5'- aGCCCUUGGCGauguUCAcuAUgCCGGuGGCGAc -3'
miRNA:   3'- -CGGGAGCCGU----AGU--UGgGGUUcCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 17682 0.69 0.317362
Target:  5'- aCCCUCGGCA-CGAUgCUGAcGGGCGc -3'
miRNA:   3'- cGGGAGCCGUaGUUGgGGUU-CCCGCu -5'
7317 3' -58.7 NC_001900.1 + 17754 0.68 0.366005
Target:  5'- cGCCCgUCaGCAUCGugC-CGAGGGUGu -3'
miRNA:   3'- -CGGG-AGcCGUAGUugGgGUUCCCGCu -5'
7317 3' -58.7 NC_001900.1 + 21051 0.69 0.349234
Target:  5'- uUCCUgGGCAcCAG-CCCGAGGGCu- -3'
miRNA:   3'- cGGGAgCCGUaGUUgGGGUUCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 23000 1.1 0.000351
Target:  5'- gGCCCUCGGCAUCAACCCCAAGGGCGAc -3'
miRNA:   3'- -CGGGAGCCGUAGUUGGGGUUCCCGCU- -5'
7317 3' -58.7 NC_001900.1 + 23074 0.76 0.120303
Target:  5'- cGCCCUUGGgGUUGAUgCCGAGGGCc- -3'
miRNA:   3'- -CGGGAGCCgUAGUUGgGGUUCCCGcu -5'
7317 3' -58.7 NC_001900.1 + 23132 0.66 0.477573
Target:  5'- gGCCCUgaccgGGCG-CAGCCC---GGGCGAg -3'
miRNA:   3'- -CGGGAg----CCGUaGUUGGGguuCCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.