miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7317 5' -53 NC_001900.1 + 5443 0.66 0.836784
Target:  5'- --cCGACCUCGGCaACaccccgGAGGUCGAc- -3'
miRNA:   3'- gaaGCUGGAGUCGcUG------CUCUAGCUca -5'
7317 5' -53 NC_001900.1 + 44878 0.66 0.82674
Target:  5'- --aCGACCUCucggaucucauccAGCGAUGGGcacUCGGGg -3'
miRNA:   3'- gaaGCUGGAG-------------UCGCUGCUCu--AGCUCa -5'
7317 5' -53 NC_001900.1 + 47678 0.66 0.822089
Target:  5'- uCUUCGACCagggcagccucacgcUCugcAGCGAUcucgGAGGUCGGGa -3'
miRNA:   3'- -GAAGCUGG---------------AG---UCGCUG----CUCUAGCUCa -5'
7317 5' -53 NC_001900.1 + 15161 0.66 0.808796
Target:  5'- gUUCGGCUUCgagGGCGGCGAuucCGAGg -3'
miRNA:   3'- gAAGCUGGAG---UCGCUGCUcuaGCUCa -5'
7317 5' -53 NC_001900.1 + 33493 0.66 0.799069
Target:  5'- -aUCGACaccgUCAGCGACGGcuuuGAUCGcAGc -3'
miRNA:   3'- gaAGCUGg---AGUCGCUGCU----CUAGC-UCa -5'
7317 5' -53 NC_001900.1 + 46199 0.66 0.789161
Target:  5'- -aUCGACCagcUCGGCGAUgGAGGUCa--- -3'
miRNA:   3'- gaAGCUGG---AGUCGCUG-CUCUAGcuca -5'
7317 5' -53 NC_001900.1 + 43997 0.67 0.768848
Target:  5'- -cUCGAUCUCAGCacCGGGA-CGAGc -3'
miRNA:   3'- gaAGCUGGAGUCGcuGCUCUaGCUCa -5'
7317 5' -53 NC_001900.1 + 25450 0.67 0.767817
Target:  5'- --aUGGCCUCAGCagcccguGACGAGGagauagCGAGg -3'
miRNA:   3'- gaaGCUGGAGUCG-------CUGCUCUa-----GCUCa -5'
7317 5' -53 NC_001900.1 + 5519 0.67 0.758468
Target:  5'- -gUCGACCUCcggGGUGuugcCGAGGUCGGu- -3'
miRNA:   3'- gaAGCUGGAG---UCGCu---GCUCUAGCUca -5'
7317 5' -53 NC_001900.1 + 27152 0.67 0.758468
Target:  5'- --gCGACCgacaUCAGCGACGAGAg-GAu- -3'
miRNA:   3'- gaaGCUGG----AGUCGCUGCUCUagCUca -5'
7317 5' -53 NC_001900.1 + 11640 0.67 0.747953
Target:  5'- --gCGGCUugUCAGUGAccacCGGGGUCGGGUc -3'
miRNA:   3'- gaaGCUGG--AGUCGCU----GCUCUAGCUCA- -5'
7317 5' -53 NC_001900.1 + 10168 0.67 0.737316
Target:  5'- --gCGACCUguuUGGCGAUcuGAUCGAGUg -3'
miRNA:   3'- gaaGCUGGA---GUCGCUGcuCUAGCUCA- -5'
7317 5' -53 NC_001900.1 + 38106 0.67 0.737316
Target:  5'- -cUUGGCCUCGGCGuuGCGcgucAGGUCGAc- -3'
miRNA:   3'- gaAGCUGGAGUCGC--UGC----UCUAGCUca -5'
7317 5' -53 NC_001900.1 + 27711 0.67 0.736246
Target:  5'- gUUUG-CCUCAGCGugGAcagccacGcAUCGAGUu -3'
miRNA:   3'- gAAGCuGGAGUCGCugCU-------C-UAGCUCA- -5'
7317 5' -53 NC_001900.1 + 15992 0.68 0.725489
Target:  5'- ---aGACCUUGGCGACGAucucgcaaaugcgGAgCGAGUa -3'
miRNA:   3'- gaagCUGGAGUCGCUGCU-------------CUaGCUCA- -5'
7317 5' -53 NC_001900.1 + 22422 0.68 0.693793
Target:  5'- --aCGAgaaCCUCcGCGACGAGAUcaccCGAGg -3'
miRNA:   3'- gaaGCU---GGAGuCGCUGCUCUA----GCUCa -5'
7317 5' -53 NC_001900.1 + 829 0.68 0.682728
Target:  5'- gUUCGACUUCuGCuucGACGGGAUCccgGAGg -3'
miRNA:   3'- gAAGCUGGAGuCG---CUGCUCUAG---CUCa -5'
7317 5' -53 NC_001900.1 + 22255 0.68 0.682728
Target:  5'- --cCGGCC-CAGCGAuggcCGAGGUCGuGg -3'
miRNA:   3'- gaaGCUGGaGUCGCU----GCUCUAGCuCa -5'
7317 5' -53 NC_001900.1 + 1663 0.69 0.660461
Target:  5'- --cCGACCUCgaacAGCGAgGAGAUccggccCGAGUc -3'
miRNA:   3'- gaaGCUGGAG----UCGCUgCUCUA------GCUCA- -5'
7317 5' -53 NC_001900.1 + 31357 0.73 0.444267
Target:  5'- -aUCaACUUCGGUGGCGAGAUCGGa- -3'
miRNA:   3'- gaAGcUGGAGUCGCUGCUCUAGCUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.