miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7318 3' -58.8 NC_001900.1 + 30535 0.66 0.479416
Target:  5'- -cGGCCGUUGgu--GCCGuaCGAGCAc -3'
miRNA:   3'- guCUGGCAGCaacuCGGCcgGCUCGU- -5'
7318 3' -58.8 NC_001900.1 + 5602 0.66 0.479416
Target:  5'- uGGAgCUGUCG--GAGCUGcGCUGGGCAg -3'
miRNA:   3'- gUCU-GGCAGCaaCUCGGC-CGGCUCGU- -5'
7318 3' -58.8 NC_001900.1 + 27897 0.66 0.46945
Target:  5'- aCAGuCCGaUCGcUGGGCCGcuGCCGuGGCGa -3'
miRNA:   3'- -GUCuGGC-AGCaACUCGGC--CGGC-UCGU- -5'
7318 3' -58.8 NC_001900.1 + 10490 0.67 0.459591
Target:  5'- gAGGCCG-CGaUGGGCCucGGCCugcuGGGCAc -3'
miRNA:   3'- gUCUGGCaGCaACUCGG--CCGG----CUCGU- -5'
7318 3' -58.8 NC_001900.1 + 34897 0.67 0.448875
Target:  5'- -uGACCGagGUcuccgagauccUGAGCCGGUgugcccgcgaaggCGAGCAg -3'
miRNA:   3'- guCUGGCagCA-----------ACUCGGCCG-------------GCUCGU- -5'
7318 3' -58.8 NC_001900.1 + 376 0.67 0.44021
Target:  5'- -cGGCCcUUGUUGGGCCGGUUauuacucagGAGCGc -3'
miRNA:   3'- guCUGGcAGCAACUCGGCCGG---------CUCGU- -5'
7318 3' -58.8 NC_001900.1 + 2347 0.67 0.44021
Target:  5'- gCAGAgUGa-GUUGGGCCGGCuCGaAGCGu -3'
miRNA:   3'- -GUCUgGCagCAACUCGGCCG-GC-UCGU- -5'
7318 3' -58.8 NC_001900.1 + 29829 0.67 0.421303
Target:  5'- -cGGCCGggucuacggCGgugGGGCCaacacgguGGCCGAGCAg -3'
miRNA:   3'- guCUGGCa--------GCaa-CUCGG--------CCGGCUCGU- -5'
7318 3' -58.8 NC_001900.1 + 44912 0.67 0.412035
Target:  5'- gAGACCG-CGUUGA-CCGGCaacGGCGa -3'
miRNA:   3'- gUCUGGCaGCAACUcGGCCGgc-UCGU- -5'
7318 3' -58.8 NC_001900.1 + 17544 0.68 0.393883
Target:  5'- gCAGACCGgacUCcaUGAGCCGGuuGAaCAg -3'
miRNA:   3'- -GUCUGGC---AGcaACUCGGCCggCUcGU- -5'
7318 3' -58.8 NC_001900.1 + 6609 0.68 0.362545
Target:  5'- gUAGGCCGguuggaugcCGUUGAggaucuggcuggccaGCgGGCCGAGCu -3'
miRNA:   3'- -GUCUGGCa--------GCAACU---------------CGgCCGGCUCGu -5'
7318 3' -58.8 NC_001900.1 + 8714 0.7 0.296374
Target:  5'- gCAGGCCGUCGgaGAcCCGGCagccgaccaGAGCc -3'
miRNA:   3'- -GUCUGGCAGCaaCUcGGCCGg--------CUCGu -5'
7318 3' -58.8 NC_001900.1 + 3547 0.7 0.296374
Target:  5'- uCGGACaCGUCGUUGuAGUCgauGGCCGGGg- -3'
miRNA:   3'- -GUCUG-GCAGCAAC-UCGG---CCGGCUCgu -5'
7318 3' -58.8 NC_001900.1 + 40324 0.71 0.248715
Target:  5'- -cGGCCGUgGUUG-GCCGcGUCGAGUg -3'
miRNA:   3'- guCUGGCAgCAACuCGGC-CGGCUCGu -5'
7318 3' -58.8 NC_001900.1 + 33383 0.71 0.235707
Target:  5'- cCAGACCGUggaggugCGgccUGcGCCGGCCGAcGCGu -3'
miRNA:   3'- -GUCUGGCA-------GCa--ACuCGGCCGGCU-CGU- -5'
7318 3' -58.8 NC_001900.1 + 39895 0.71 0.230309
Target:  5'- uCAGAUCGUucCGUacgaGGCCGGCCuGAGCAc -3'
miRNA:   3'- -GUCUGGCA--GCAac--UCGGCCGG-CUCGU- -5'
7318 3' -58.8 NC_001900.1 + 27468 0.71 0.229716
Target:  5'- gGGGCCGagcCGcacggccUUGAGCCGGCCGucGGCGa -3'
miRNA:   3'- gUCUGGCa--GC-------AACUCGGCCGGC--UCGU- -5'
7318 3' -58.8 NC_001900.1 + 3915 0.75 0.13887
Target:  5'- gAGuuCGUCGgcGAGCUGGCCGAGaCGc -3'
miRNA:   3'- gUCugGCAGCaaCUCGGCCGGCUC-GU- -5'
7318 3' -58.8 NC_001900.1 + 23162 1.08 0.000463
Target:  5'- cCAGACCGUCGUUGAGCCGGCCGAGCAg -3'
miRNA:   3'- -GUCUGGCAGCAACUCGGCCGGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.