Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7318 | 3' | -58.8 | NC_001900.1 | + | 23162 | 1.08 | 0.000463 |
Target: 5'- cCAGACCGUCGUUGAGCCGGCCGAGCAg -3' miRNA: 3'- -GUCUGGCAGCAACUCGGCCGGCUCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 3915 | 0.75 | 0.13887 |
Target: 5'- gAGuuCGUCGgcGAGCUGGCCGAGaCGc -3' miRNA: 3'- gUCugGCAGCaaCUCGGCCGGCUC-GU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 27468 | 0.71 | 0.229716 |
Target: 5'- gGGGCCGagcCGcacggccUUGAGCCGGCCGucGGCGa -3' miRNA: 3'- gUCUGGCa--GC-------AACUCGGCCGGC--UCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 39895 | 0.71 | 0.230309 |
Target: 5'- uCAGAUCGUucCGUacgaGGCCGGCCuGAGCAc -3' miRNA: 3'- -GUCUGGCA--GCAac--UCGGCCGG-CUCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 33383 | 0.71 | 0.235707 |
Target: 5'- cCAGACCGUggaggugCGgccUGcGCCGGCCGAcGCGu -3' miRNA: 3'- -GUCUGGCA-------GCa--ACuCGGCCGGCU-CGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 40324 | 0.71 | 0.248715 |
Target: 5'- -cGGCCGUgGUUG-GCCGcGUCGAGUg -3' miRNA: 3'- guCUGGCAgCAACuCGGC-CGGCUCGu -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 8714 | 0.7 | 0.296374 |
Target: 5'- gCAGGCCGUCGgaGAcCCGGCagccgaccaGAGCc -3' miRNA: 3'- -GUCUGGCAGCaaCUcGGCCGg--------CUCGu -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 3547 | 0.7 | 0.296374 |
Target: 5'- uCGGACaCGUCGUUGuAGUCgauGGCCGGGg- -3' miRNA: 3'- -GUCUG-GCAGCAAC-UCGG---CCGGCUCgu -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 6609 | 0.68 | 0.362545 |
Target: 5'- gUAGGCCGguuggaugcCGUUGAggaucuggcuggccaGCgGGCCGAGCu -3' miRNA: 3'- -GUCUGGCa--------GCAACU---------------CGgCCGGCUCGu -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 17544 | 0.68 | 0.393883 |
Target: 5'- gCAGACCGgacUCcaUGAGCCGGuuGAaCAg -3' miRNA: 3'- -GUCUGGC---AGcaACUCGGCCggCUcGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 44912 | 0.67 | 0.412035 |
Target: 5'- gAGACCG-CGUUGA-CCGGCaacGGCGa -3' miRNA: 3'- gUCUGGCaGCAACUcGGCCGgc-UCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 29829 | 0.67 | 0.421303 |
Target: 5'- -cGGCCGggucuacggCGgugGGGCCaacacgguGGCCGAGCAg -3' miRNA: 3'- guCUGGCa--------GCaa-CUCGG--------CCGGCUCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 376 | 0.67 | 0.44021 |
Target: 5'- -cGGCCcUUGUUGGGCCGGUUauuacucagGAGCGc -3' miRNA: 3'- guCUGGcAGCAACUCGGCCGG---------CUCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 2347 | 0.67 | 0.44021 |
Target: 5'- gCAGAgUGa-GUUGGGCCGGCuCGaAGCGu -3' miRNA: 3'- -GUCUgGCagCAACUCGGCCG-GC-UCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 34897 | 0.67 | 0.448875 |
Target: 5'- -uGACCGagGUcuccgagauccUGAGCCGGUgugcccgcgaaggCGAGCAg -3' miRNA: 3'- guCUGGCagCA-----------ACUCGGCCG-------------GCUCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 10490 | 0.67 | 0.459591 |
Target: 5'- gAGGCCG-CGaUGGGCCucGGCCugcuGGGCAc -3' miRNA: 3'- gUCUGGCaGCaACUCGG--CCGG----CUCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 27897 | 0.66 | 0.46945 |
Target: 5'- aCAGuCCGaUCGcUGGGCCGcuGCCGuGGCGa -3' miRNA: 3'- -GUCuGGC-AGCaACUCGGC--CGGC-UCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 30535 | 0.66 | 0.479416 |
Target: 5'- -cGGCCGUUGgu--GCCGuaCGAGCAc -3' miRNA: 3'- guCUGGCAGCaacuCGGCcgGCUCGU- -5' |
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7318 | 3' | -58.8 | NC_001900.1 | + | 5602 | 0.66 | 0.479416 |
Target: 5'- uGGAgCUGUCG--GAGCUGcGCUGGGCAg -3' miRNA: 3'- gUCU-GGCAGCaaCUCGGC-CGGCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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