miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7319 5' -59.8 NC_001900.1 + 36508 0.66 0.47112
Target:  5'- aGCugCGg-CCCGGUGAGGCcgUgaucuacguccgcaaGCAGGu -3'
miRNA:   3'- cCGugGUagGGGCCACUCCG--A---------------CGUCC- -5'
7319 5' -59.8 NC_001900.1 + 18937 0.66 0.467197
Target:  5'- cGCACCGUCCCCGGaGAuacccaGGUccGUaAGGa -3'
miRNA:   3'- cCGUGGUAGGGGCCaCU------CCGa-CG-UCC- -5'
7319 5' -59.8 NC_001900.1 + 19866 0.66 0.457464
Target:  5'- aGCuCCGagucgggcUCCCCGGUGuGGGC-GCGGa -3'
miRNA:   3'- cCGuGGU--------AGGGGCCAC-UCCGaCGUCc -5'
7319 5' -59.8 NC_001900.1 + 39118 0.66 0.428938
Target:  5'- cGGCGCUAugcgcUCCCCgaugaccuggacGGccgGGGGCUuacGCAGGu -3'
miRNA:   3'- -CCGUGGU-----AGGGG------------CCa--CUCCGA---CGUCC- -5'
7319 5' -59.8 NC_001900.1 + 23601 0.66 0.428938
Target:  5'- --aGCCG-CCCCGGaaGAGGcCUGCAGc -3'
miRNA:   3'- ccgUGGUaGGGGCCa-CUCC-GACGUCc -5'
7319 5' -59.8 NC_001900.1 + 40500 0.68 0.366673
Target:  5'- aGGCACCGgcgCCCCgcuGGUGuucCUGCAcGGg -3'
miRNA:   3'- -CCGUGGUa--GGGG---CCACuccGACGU-CC- -5'
7319 5' -59.8 NC_001900.1 + 24068 0.68 0.341961
Target:  5'- aGCACCugugCCgCCGuUGGGGauCUGCAGGa -3'
miRNA:   3'- cCGUGGua--GG-GGCcACUCC--GACGUCC- -5'
7319 5' -59.8 NC_001900.1 + 1226 0.69 0.289076
Target:  5'- aGGCACCGgugguguaCUCGGUGGcGGCgGCAGcGg -3'
miRNA:   3'- -CCGUGGUag------GGGCCACU-CCGaCGUC-C- -5'
7319 5' -59.8 NC_001900.1 + 5532 0.7 0.275195
Target:  5'- cGGgACUucUCCCGGUG-GGCUcacgGCAGGg -3'
miRNA:   3'- -CCgUGGuaGGGGCCACuCCGA----CGUCC- -5'
7319 5' -59.8 NC_001900.1 + 36621 0.7 0.248413
Target:  5'- aGGUACUccucccuGUCCagacgaCGGUcGAGGUUGCGGGu -3'
miRNA:   3'- -CCGUGG-------UAGGg-----GCCA-CUCCGACGUCC- -5'
7319 5' -59.8 NC_001900.1 + 6375 0.7 0.247163
Target:  5'- uGGCacgcugACCAccUCCCCGGUGgaucaggucaccagGGGCgucgaGCAGGu -3'
miRNA:   3'- -CCG------UGGU--AGGGGCCAC--------------UCCGa----CGUCC- -5'
7319 5' -59.8 NC_001900.1 + 24038 0.74 0.136195
Target:  5'- cGCGCCAaCCUCGGUgccGAGGCggcuaucccgGCAGGg -3'
miRNA:   3'- cCGUGGUaGGGGCCA---CUCCGa---------CGUCC- -5'
7319 5' -59.8 NC_001900.1 + 23510 1.11 0.000225
Target:  5'- cGGCACCAUCCCCGGUGAGGCUGCAGGc -3'
miRNA:   3'- -CCGUGGUAGGGGCCACUCCGACGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.