miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
732 5' -61 AC_000020.1 + 21489 0.66 0.276353
Target:  5'- cCCCCGCgCCuugagGGUGGcGguGGCu -3'
miRNA:   3'- cGGGGCGaGGuguaaCCGCC-CguCCG- -5'
732 5' -61 AC_000020.1 + 17983 0.66 0.274948
Target:  5'- aGCCUgGUUCCACAUggaaaaguaGCGGGaccugucugugaGGGCa -3'
miRNA:   3'- -CGGGgCGAGGUGUAac-------CGCCCg-----------UCCG- -5'
732 5' -61 AC_000020.1 + 12564 0.67 0.242923
Target:  5'- cGCCCCaGCUUgggGCGUaGGUGGGCaaagGGGUu -3'
miRNA:   3'- -CGGGG-CGAGg--UGUAaCCGCCCG----UCCG- -5'
732 5' -61 AC_000020.1 + 15039 0.67 0.236655
Target:  5'- uGCCUCGCcaggacgcgCCACGggcuccUGGgGGGUgauGGGCa -3'
miRNA:   3'- -CGGGGCGa--------GGUGUa-----ACCgCCCG---UCCG- -5'
732 5' -61 AC_000020.1 + 2646 0.68 0.218661
Target:  5'- -aCCUGCUCUAUuaugcUGGgGGGUcaGGGCa -3'
miRNA:   3'- cgGGGCGAGGUGua---ACCgCCCG--UCCG- -5'
732 5' -61 AC_000020.1 + 14728 0.68 0.196499
Target:  5'- cGCUuuGCUCCccgGCGUcccuaccagUGGCGGGgucGGCg -3'
miRNA:   3'- -CGGggCGAGG---UGUA---------ACCGCCCgu-CCG- -5'
732 5' -61 AC_000020.1 + 9560 0.7 0.158012
Target:  5'- cCCCCGCcCCACcuuUUGGUGGGCu--- -3'
miRNA:   3'- cGGGGCGaGGUGu--AACCGCCCGuccg -5'
732 5' -61 AC_000020.1 + 9898 0.7 0.153711
Target:  5'- uCUCUGCUUCuagcuugcugGCAgaGGCGGGCAGGg -3'
miRNA:   3'- cGGGGCGAGG----------UGUaaCCGCCCGUCCg -5'
732 5' -61 AC_000020.1 + 27300 0.7 0.141436
Target:  5'- aGCUCCGCUCUGCAc-GGCaaGGCcGGCa -3'
miRNA:   3'- -CGGGGCGAGGUGUaaCCGc-CCGuCCG- -5'
732 5' -61 AC_000020.1 + 6801 0.7 0.139869
Target:  5'- gGCCCUGCUCC-CAgugcucguaacucUUGGCaGGCacguagcugggguuAGGCa -3'
miRNA:   3'- -CGGGGCGAGGuGU-------------AACCGcCCG--------------UCCG- -5'
732 5' -61 AC_000020.1 + 4952 0.74 0.067387
Target:  5'- uGCCCuUGC-CCACGUgaUGGCacuuaGGGCAGGUg -3'
miRNA:   3'- -CGGG-GCGaGGUGUA--ACCG-----CCCGUCCG- -5'
732 5' -61 AC_000020.1 + 6015 0.76 0.051829
Target:  5'- uGCCCCcauuuuGCUCaCGCAa-GGgGGGCAGGCu -3'
miRNA:   3'- -CGGGG------CGAG-GUGUaaCCgCCCGUCCG- -5'
732 5' -61 AC_000020.1 + 7713 0.77 0.046091
Target:  5'- gGCCUC-CUCUAUGagGGCGGGCAGGUu -3'
miRNA:   3'- -CGGGGcGAGGUGUaaCCGCCCGUCCG- -5'
732 5' -61 AC_000020.1 + 11373 1.01 0.000518
Target:  5'- gGCCCCGCU-CACAUUGGCGGGCAGGCg -3'
miRNA:   3'- -CGGGGCGAgGUGUAACCGCCCGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.