Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7320 | 3' | -57.8 | NC_001900.1 | + | 23818 | 1.14 | 0.000269 |
Target: 5'- uCCGGUCGGCUAUCGGCGCUGGCUUCCg -3' miRNA: 3'- -GGCCAGCCGAUAGCCGCGACCGAAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 21619 | 0.74 | 0.189166 |
Target: 5'- aUCGcGUCGGCacAUCGGUGCUcGGCUaCCc -3' miRNA: 3'- -GGC-CAGCCGa-UAGCCGCGA-CCGAaGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 24121 | 0.74 | 0.199375 |
Target: 5'- gCCGGgauagccgccUCGGCaccgagGUUGGCGCgGGCUUCg -3' miRNA: 3'- -GGCC----------AGCCGa-----UAGCCGCGaCCGAAGg -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 24700 | 0.73 | 0.215586 |
Target: 5'- gCGGUCacacagaucacuGGCgucAUCGGCGCUGGUgguaCCg -3' miRNA: 3'- gGCCAG------------CCGa--UAGCCGCGACCGaa--GG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 38783 | 0.7 | 0.337493 |
Target: 5'- cUCGG-CGGCUGggcuUCcGUGCaGGCUUCCu -3' miRNA: 3'- -GGCCaGCCGAU----AGcCGCGaCCGAAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 8625 | 0.7 | 0.353772 |
Target: 5'- aCUGGaCGGCUcugGUCGGCuGCcgGGUcUCCg -3' miRNA: 3'- -GGCCaGCCGA---UAGCCG-CGa-CCGaAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 1609 | 0.7 | 0.353772 |
Target: 5'- -aGGUCGGCUucUCGGCcGgUGGCgacaCCc -3' miRNA: 3'- ggCCAGCCGAu-AGCCG-CgACCGaa--GG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 44171 | 0.68 | 0.452765 |
Target: 5'- uUGGUCGGCU-UCGGUGCcuUGcccuuCUUCCc -3' miRNA: 3'- gGCCAGCCGAuAGCCGCG--ACc----GAAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 23469 | 0.68 | 0.462499 |
Target: 5'- cCUGGUCGGUccacUCGGCcugaUGGCcgUCCu -3' miRNA: 3'- -GGCCAGCCGau--AGCCGcg--ACCGa-AGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 39799 | 0.68 | 0.472342 |
Target: 5'- cCCGGagcuggCGGCUGaucUCaucGCGCUGGCU-CUg -3' miRNA: 3'- -GGCCa-----GCCGAU---AGc--CGCGACCGAaGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 27451 | 0.67 | 0.482289 |
Target: 5'- cCCGGUagcacccucugGGCUcuggaGGgGCUGGCUUCg -3' miRNA: 3'- -GGCCAg----------CCGAuag--CCgCGACCGAAGg -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 43927 | 0.67 | 0.512713 |
Target: 5'- aCCaGUCGGCccagcccUC-GCGCUGGCcgUUCCc -3' miRNA: 3'- -GGcCAGCCGau-----AGcCGCGACCG--AAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 1 | 0.67 | 0.524068 |
Target: 5'- --GGUCGGUUAUgCGGC-CgagccauccuguacgGGUUUCCa -3' miRNA: 3'- ggCCAGCCGAUA-GCCGcGa--------------CCGAAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 903 | 0.67 | 0.533428 |
Target: 5'- -aGGUCgaccaGGCgcuuuUCcGCGCUGGCcUCCa -3' miRNA: 3'- ggCCAG-----CCGau---AGcCGCGACCGaAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 3133 | 0.66 | 0.543898 |
Target: 5'- gCCGGUCGG--GUCGGCG--GGUgcCCg -3' miRNA: 3'- -GGCCAGCCgaUAGCCGCgaCCGaaGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 1381 | 0.66 | 0.553377 |
Target: 5'- -gGGUCcaucgGGCUGUuguagguccagucUGGCGuCUGGCUgCCg -3' miRNA: 3'- ggCCAG-----CCGAUA-------------GCCGC-GACCGAaGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 32659 | 0.66 | 0.554434 |
Target: 5'- cUCGacGUgGGCcaugaGUCGGUGCUGGagcaUUCCa -3' miRNA: 3'- -GGC--CAgCCGa----UAGCCGCGACCg---AAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 13281 | 0.66 | 0.554434 |
Target: 5'- gCgGGUUugGGUUuggUGGUGCgaGGCUUCCg -3' miRNA: 3'- -GgCCAG--CCGAua-GCCGCGa-CCGAAGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 5495 | 0.66 | 0.554434 |
Target: 5'- gUCGGuUCGGgUGUCGuaggcgucccCGCUGGCguacUCCg -3' miRNA: 3'- -GGCC-AGCCgAUAGCc---------GCGACCGa---AGG- -5' |
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7320 | 3' | -57.8 | NC_001900.1 | + | 33298 | 0.66 | 0.575676 |
Target: 5'- aCGcGUCGGC---CGGCGCaGGCcgcaccUCCa -3' miRNA: 3'- gGC-CAGCCGauaGCCGCGaCCGa-----AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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