miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7320 5' -58.8 NC_001900.1 + 17701 0.66 0.488472
Target:  5'- cGGGcgcucugcAGGCUcugGGGCCUGUgcuGACCGugGu -3'
miRNA:   3'- aCCCu-------UCCGG---UCCGGGCA---UUGGCugU- -5'
7320 5' -58.8 NC_001900.1 + 1064 0.66 0.478372
Target:  5'- cGGGAAGGUucaugucgucgCAGuaCCGcAGCCGGCc -3'
miRNA:   3'- aCCCUUCCG-----------GUCcgGGCaUUGGCUGu -5'
7320 5' -58.8 NC_001900.1 + 25002 0.67 0.435222
Target:  5'- gUGGGuaucaccgguuuGGCCGGuggucccgguGCCCGUGGCCaGGCGu -3'
miRNA:   3'- -ACCCuu----------CCGGUC----------CGGGCAUUGG-CUGU- -5'
7320 5' -58.8 NC_001900.1 + 4050 0.67 0.429513
Target:  5'- cGGuGAuGGCCuucgaGGuGCCCGUgaGACCGGCc -3'
miRNA:   3'- aCC-CUuCCGG-----UC-CGGGCA--UUGGCUGu -5'
7320 5' -58.8 NC_001900.1 + 17248 0.67 0.429513
Target:  5'- cUGGcGAguucuucaccGGGCuCGGGCCgGUcaucucGACCGGCAc -3'
miRNA:   3'- -ACC-CU----------UCCG-GUCCGGgCA------UUGGCUGU- -5'
7320 5' -58.8 NC_001900.1 + 6791 0.67 0.420097
Target:  5'- cGGGAAGGCCgcagcgGGGUa-GUuGCCGAUg -3'
miRNA:   3'- aCCCUUCCGG------UCCGggCAuUGGCUGu -5'
7320 5' -58.8 NC_001900.1 + 41085 0.68 0.383716
Target:  5'- ----cGGGCCAGGCCgGUGACCucGCGg -3'
miRNA:   3'- acccuUCCGGUCCGGgCAUUGGc-UGU- -5'
7320 5' -58.8 NC_001900.1 + 15693 0.68 0.361217
Target:  5'- gGGGGAGGCaAGGCCCGccaaggaAACCucccccuccgggguaGACAg -3'
miRNA:   3'- aCCCUUCCGgUCCGGGCa------UUGG---------------CUGU- -5'
7320 5' -58.8 NC_001900.1 + 15207 0.68 0.357839
Target:  5'- cGGGAGcGuGCCucGGCUggUGUGGCCGACGc -3'
miRNA:   3'- aCCCUU-C-CGGu-CCGG--GCAUUGGCUGU- -5'
7320 5' -58.8 NC_001900.1 + 43845 0.69 0.309845
Target:  5'- cGGGAAcGGCCAGcGCgaGggcugGGCCGACu -3'
miRNA:   3'- aCCCUU-CCGGUC-CGggCa----UUGGCUGu -5'
7320 5' -58.8 NC_001900.1 + 44251 0.71 0.247314
Target:  5'- gGGGAagaaGGGCaAGGCaCCGaAGCCGACc -3'
miRNA:   3'- aCCCU----UCCGgUCCG-GGCaUUGGCUGu -5'
7320 5' -58.8 NC_001900.1 + 5628 0.71 0.234921
Target:  5'- cGGGcguGGGGaCCAGGCCCcu-GCCGugAg -3'
miRNA:   3'- aCCC---UUCC-GGUCCGGGcauUGGCugU- -5'
7320 5' -58.8 NC_001900.1 + 3084 0.71 0.228922
Target:  5'- cGGGAAGGUCGuugaCGUGACCGACGu -3'
miRNA:   3'- aCCCUUCCGGUccggGCAUUGGCUGU- -5'
7320 5' -58.8 NC_001900.1 + 214 0.72 0.195602
Target:  5'- ----cGGGCCuguauGGCCCGUAGCCGAUu -3'
miRNA:   3'- acccuUCCGGu----CCGGGCAUUGGCUGu -5'
7320 5' -58.8 NC_001900.1 + 6699 0.74 0.141513
Target:  5'- gGGGAucGGGCU-GGCCCGU-GCCGugAa -3'
miRNA:   3'- aCCCU--UCCGGuCCGGGCAuUGGCugU- -5'
7320 5' -58.8 NC_001900.1 + 27174 0.76 0.104325
Target:  5'- cUGGGcguGGGCCAcguuGCCCGcGACCGACAu -3'
miRNA:   3'- -ACCCu--UCCGGUc---CGGGCaUUGGCUGU- -5'
7320 5' -58.8 NC_001900.1 + 23855 1 0.001852
Target:  5'- cUGGGAAGGCCAGGCCCGUAACCG-CAa -3'
miRNA:   3'- -ACCCUUCCGGUCCGGGCAUUGGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.