miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7321 3' -54.1 NC_001900.1 + 4071 0.66 0.771993
Target:  5'- uGCCUGGcUCGACcaccGAgACGgugauggccuUCGaGGUGCCc -3'
miRNA:   3'- -UGGACC-AGCUG----UUgUGC----------AGC-CUACGG- -5'
7321 3' -54.1 NC_001900.1 + 15422 0.66 0.771993
Target:  5'- gGCC-GGUguccgucgCGACGACGCGaUCGaGcUGCCg -3'
miRNA:   3'- -UGGaCCA--------GCUGUUGUGC-AGC-CuACGG- -5'
7321 3' -54.1 NC_001900.1 + 4848 0.66 0.761759
Target:  5'- aGCCUGGUaCGGCGgucggaaggACugGaUCGGAaaCCg -3'
miRNA:   3'- -UGGACCA-GCUGU---------UGugC-AGCCUacGG- -5'
7321 3' -54.1 NC_001900.1 + 27090 0.66 0.75139
Target:  5'- gGCCacGGUCGcCAucguCGCGacgaGGAUGCCu -3'
miRNA:   3'- -UGGa-CCAGCuGUu---GUGCag--CCUACGG- -5'
7321 3' -54.1 NC_001900.1 + 17257 0.66 0.740898
Target:  5'- cCCUG--CGACAcCACGUCGGugaaGCCc -3'
miRNA:   3'- uGGACcaGCUGUuGUGCAGCCua--CGG- -5'
7321 3' -54.1 NC_001900.1 + 134 0.67 0.730294
Target:  5'- cGCCUGGgcgaGGCGcucuaGCGUCGGcccGUGCUu -3'
miRNA:   3'- -UGGACCag--CUGUug---UGCAGCC---UACGG- -5'
7321 3' -54.1 NC_001900.1 + 27587 0.67 0.730294
Target:  5'- cCUUGGgguaGACGACGCGcucgauccCGGAUGCa -3'
miRNA:   3'- uGGACCag--CUGUUGUGCa-------GCCUACGg -5'
7321 3' -54.1 NC_001900.1 + 12632 0.67 0.697932
Target:  5'- cACCUGGUCGu--ACACgGUCGuggcaccgguGGUGUCa -3'
miRNA:   3'- -UGGACCAGCuguUGUG-CAGC----------CUACGG- -5'
7321 3' -54.1 NC_001900.1 + 30476 0.67 0.697932
Target:  5'- cACCaacGGcCGGCu-CACGUCGGGcaccagcggUGCCa -3'
miRNA:   3'- -UGGa--CCaGCUGuuGUGCAGCCU---------ACGG- -5'
7321 3' -54.1 NC_001900.1 + 8248 0.68 0.676013
Target:  5'- cGCCUucUCGGCGAC-CGUCucGGUGCCg -3'
miRNA:   3'- -UGGAccAGCUGUUGuGCAGc-CUACGG- -5'
7321 3' -54.1 NC_001900.1 + 40325 0.68 0.676013
Target:  5'- gGCCgUGGUUGGC--CGCGUCGaGUGCg -3'
miRNA:   3'- -UGG-ACCAGCUGuuGUGCAGCcUACGg -5'
7321 3' -54.1 NC_001900.1 + 6629 0.68 0.676013
Target:  5'- uGCg-GGUCGaACGGCugGcuguaggccggUUGGAUGCCg -3'
miRNA:   3'- -UGgaCCAGC-UGUUGugC-----------AGCCUACGG- -5'
7321 3' -54.1 NC_001900.1 + 36844 0.68 0.653925
Target:  5'- gGCCgauucucGGUCGACGGcCACGUCugGGAgGUCu -3'
miRNA:   3'- -UGGa------CCAGCUGUU-GUGCAG--CCUaCGG- -5'
7321 3' -54.1 NC_001900.1 + 33921 0.68 0.653925
Target:  5'- -aCUGGUCGuuguCAGCACcgagaacCGGAUGCg -3'
miRNA:   3'- ugGACCAGCu---GUUGUGca-----GCCUACGg -5'
7321 3' -54.1 NC_001900.1 + 38704 0.68 0.620666
Target:  5'- cCCUGG-CG-UAACugGUCGGuUGCa -3'
miRNA:   3'- uGGACCaGCuGUUGugCAGCCuACGg -5'
7321 3' -54.1 NC_001900.1 + 12570 0.69 0.609587
Target:  5'- gACCgauguaGGUCGGgAACGggcUGUCGG-UGCCg -3'
miRNA:   3'- -UGGa-----CCAGCUgUUGU---GCAGCCuACGG- -5'
7321 3' -54.1 NC_001900.1 + 3461 0.69 0.609587
Target:  5'- cACCUGGU--GCAGCGCGUUGuGcucGCCg -3'
miRNA:   3'- -UGGACCAgcUGUUGUGCAGC-Cua-CGG- -5'
7321 3' -54.1 NC_001900.1 + 2449 0.69 0.586396
Target:  5'- ---aGGUCGACGGCcccggcuGCGUCcGGGcUGCCa -3'
miRNA:   3'- uggaCCAGCUGUUG-------UGCAG-CCU-ACGG- -5'
7321 3' -54.1 NC_001900.1 + 28817 0.69 0.569932
Target:  5'- gACCUGGUUGACGugGCccccgaaccagacCGGA-GCCa -3'
miRNA:   3'- -UGGACCAGCUGUugUGca-----------GCCUaCGG- -5'
7321 3' -54.1 NC_001900.1 + 6313 0.69 0.565559
Target:  5'- aACCUGGUCGGCGcagccGCAC--CGGccacgGCCg -3'
miRNA:   3'- -UGGACCAGCUGU-----UGUGcaGCCua---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.