miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7321 3' -54.1 NC_001900.1 + 24143 1.11 0.000972
Target:  5'- cACCUGGUCGACAACACGUCGGAUGCCc -3'
miRNA:   3'- -UGGACCAGCUGUUGUGCAGCCUACGG- -5'
7321 3' -54.1 NC_001900.1 + 964 0.79 0.168597
Target:  5'- cGCCUGGUCGACcuuCGaGgagCGGAUGCCc -3'
miRNA:   3'- -UGGACCAGCUGuu-GUgCa--GCCUACGG- -5'
7321 3' -54.1 NC_001900.1 + 35371 0.75 0.286407
Target:  5'- -gCUGGUCGACAucuguGgGCGUCGGgcGUCa -3'
miRNA:   3'- ugGACCAGCUGU-----UgUGCAGCCuaCGG- -5'
7321 3' -54.1 NC_001900.1 + 33285 0.74 0.308841
Target:  5'- aACgUGaUCGACAACGCGUCGGccggcgcagGCCg -3'
miRNA:   3'- -UGgACcAGCUGUUGUGCAGCCua-------CGG- -5'
7321 3' -54.1 NC_001900.1 + 42428 0.73 0.375087
Target:  5'- gAUCUGG--GugAACGCGUCGGAguccGCCg -3'
miRNA:   3'- -UGGACCagCugUUGUGCAGCCUa---CGG- -5'
7321 3' -54.1 NC_001900.1 + 8297 0.71 0.459273
Target:  5'- uGCCUGuGUCGACGgacuucccggacuGCACGUCc--UGCCa -3'
miRNA:   3'- -UGGAC-CAGCUGU-------------UGUGCAGccuACGG- -5'
7321 3' -54.1 NC_001900.1 + 1370 0.71 0.460275
Target:  5'- cGCCgcccgCGAcCAGCAcucacCGUCGGAUGCCa -3'
miRNA:   3'- -UGGacca-GCU-GUUGU-----GCAGCCUACGG- -5'
7321 3' -54.1 NC_001900.1 + 37559 0.71 0.470368
Target:  5'- gGCgUGGUCGAgcuugaAAC-CGUCGcGGUGCCc -3'
miRNA:   3'- -UGgACCAGCUg-----UUGuGCAGC-CUACGG- -5'
7321 3' -54.1 NC_001900.1 + 15378 0.7 0.522399
Target:  5'- cACCgggGGUCGugGAgGCGuUCGG--GCCg -3'
miRNA:   3'- -UGGa--CCAGCugUUgUGC-AGCCuaCGG- -5'
7321 3' -54.1 NC_001900.1 + 8625 0.7 0.522399
Target:  5'- -aCUGGaCGGCu-CugGUCGGcUGCCg -3'
miRNA:   3'- ugGACCaGCUGuuGugCAGCCuACGG- -5'
7321 3' -54.1 NC_001900.1 + 43104 0.7 0.559017
Target:  5'- gGCCUGGcCGGuucagcagcCAGCccagagcaucgagcuGCGcUCGGGUGCCg -3'
miRNA:   3'- -UGGACCaGCU---------GUUG---------------UGC-AGCCUACGG- -5'
7321 3' -54.1 NC_001900.1 + 35854 0.69 0.562286
Target:  5'- -aCUGGUCGcaggacgaccuggaGCAGUACGUCGGcgGCg -3'
miRNA:   3'- ugGACCAGC--------------UGUUGUGCAGCCuaCGg -5'
7321 3' -54.1 NC_001900.1 + 6313 0.69 0.565559
Target:  5'- aACCUGGUCGGCGcagccGCAC--CGGccacgGCCg -3'
miRNA:   3'- -UGGACCAGCUGU-----UGUGcaGCCua---CGG- -5'
7321 3' -54.1 NC_001900.1 + 28817 0.69 0.569932
Target:  5'- gACCUGGUUGACGugGCccccgaaccagacCGGA-GCCa -3'
miRNA:   3'- -UGGACCAGCUGUugUGca-----------GCCUaCGG- -5'
7321 3' -54.1 NC_001900.1 + 2449 0.69 0.586396
Target:  5'- ---aGGUCGACGGCcccggcuGCGUCcGGGcUGCCa -3'
miRNA:   3'- uggaCCAGCUGUUG-------UGCAG-CCU-ACGG- -5'
7321 3' -54.1 NC_001900.1 + 12570 0.69 0.609587
Target:  5'- gACCgauguaGGUCGGgAACGggcUGUCGG-UGCCg -3'
miRNA:   3'- -UGGa-----CCAGCUgUUGU---GCAGCCuACGG- -5'
7321 3' -54.1 NC_001900.1 + 3461 0.69 0.609587
Target:  5'- cACCUGGU--GCAGCGCGUUGuGcucGCCg -3'
miRNA:   3'- -UGGACCAgcUGUUGUGCAGC-Cua-CGG- -5'
7321 3' -54.1 NC_001900.1 + 38704 0.68 0.620666
Target:  5'- cCCUGG-CG-UAACugGUCGGuUGCa -3'
miRNA:   3'- uGGACCaGCuGUUGugCAGCCuACGg -5'
7321 3' -54.1 NC_001900.1 + 36844 0.68 0.653925
Target:  5'- gGCCgauucucGGUCGACGGcCACGUCugGGAgGUCu -3'
miRNA:   3'- -UGGa------CCAGCUGUU-GUGCAG--CCUaCGG- -5'
7321 3' -54.1 NC_001900.1 + 33921 0.68 0.653925
Target:  5'- -aCUGGUCGuuguCAGCACcgagaacCGGAUGCg -3'
miRNA:   3'- ugGACCAGCu---GUUGUGca-----GCCUACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.