miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7321 5' -58.5 NC_001900.1 + 19857 0.66 0.502349
Target:  5'- cCGGCgUCUugaGCCGgcgGUUGGCGAACu- -3'
miRNA:   3'- aGCCG-AGGg--CGGCa--CGACUGCUUGuu -5'
7321 5' -58.5 NC_001900.1 + 39516 0.66 0.502349
Target:  5'- aCGGCUUCCGuUUGUGCUuACGAuucuGCAc -3'
miRNA:   3'- aGCCGAGGGC-GGCACGAcUGCU----UGUu -5'
7321 5' -58.5 NC_001900.1 + 22007 0.66 0.492051
Target:  5'- cUGGCUCCgggaGCUG-GCUGAUGAggacgGCAAc -3'
miRNA:   3'- aGCCGAGGg---CGGCaCGACUGCU-----UGUU- -5'
7321 5' -58.5 NC_001900.1 + 28959 0.66 0.481852
Target:  5'- uUCGGaCUCCCGacggcaagGUGCUGACccACAAg -3'
miRNA:   3'- -AGCC-GAGGGCgg------CACGACUGcuUGUU- -5'
7321 5' -58.5 NC_001900.1 + 23767 0.66 0.475782
Target:  5'- cCGGCUCCCcaggagcaguugaacGCCGaGCcGACGAAg-- -3'
miRNA:   3'- aGCCGAGGG---------------CGGCaCGaCUGCUUguu -5'
7321 5' -58.5 NC_001900.1 + 26351 0.66 0.46575
Target:  5'- cUCGGCccgaaguaccgcugCCCGUCGaucggGCUGACGuACGAc -3'
miRNA:   3'- -AGCCGa-------------GGGCGGCa----CGACUGCuUGUU- -5'
7321 5' -58.5 NC_001900.1 + 36361 0.66 0.461768
Target:  5'- aUCGGUaccuggucgacaUCCUGCC--GCUGGCGAugAAg -3'
miRNA:   3'- -AGCCG------------AGGGCGGcaCGACUGCUugUU- -5'
7321 5' -58.5 NC_001900.1 + 40821 0.67 0.451893
Target:  5'- aCGGCggcgCUCGCgGcGCUGACGA-CAu -3'
miRNA:   3'- aGCCGa---GGGCGgCaCGACUGCUuGUu -5'
7321 5' -58.5 NC_001900.1 + 41936 0.67 0.442135
Target:  5'- cCGGUUCuuGaCCGUGgaGACguuGAGCGAg -3'
miRNA:   3'- aGCCGAGggC-GGCACgaCUG---CUUGUU- -5'
7321 5' -58.5 NC_001900.1 + 32353 0.67 0.442135
Target:  5'- gCGGCUCggGCCGUuCUGcCGAACAu -3'
miRNA:   3'- aGCCGAGggCGGCAcGACuGCUUGUu -5'
7321 5' -58.5 NC_001900.1 + 14751 0.67 0.432496
Target:  5'- gUUGGCguuccugaUCCCGCCGaUGC-GGCGGAUg- -3'
miRNA:   3'- -AGCCG--------AGGGCGGC-ACGaCUGCUUGuu -5'
7321 5' -58.5 NC_001900.1 + 33402 0.67 0.422982
Target:  5'- gCGGUgucgaCCGgCGcGCUGGCGAACGGg -3'
miRNA:   3'- aGCCGag---GGCgGCaCGACUGCUUGUU- -5'
7321 5' -58.5 NC_001900.1 + 39671 0.67 0.413594
Target:  5'- gUCGuaCUUCUGCC-UGCUGAUGGACAAc -3'
miRNA:   3'- -AGCc-GAGGGCGGcACGACUGCUUGUU- -5'
7321 5' -58.5 NC_001900.1 + 39932 0.68 0.386216
Target:  5'- aCGGCguaccgaCCGCCGUGCUccACGGGCu- -3'
miRNA:   3'- aGCCGag-----GGCGGCACGAc-UGCUUGuu -5'
7321 5' -58.5 NC_001900.1 + 19998 0.68 0.368641
Target:  5'- uUCGGCUCCCgagGCCGUggucgcgcuGCUGGggucuCGAAUGAg -3'
miRNA:   3'- -AGCCGAGGG---CGGCA---------CGACU-----GCUUGUU- -5'
7321 5' -58.5 NC_001900.1 + 4021 0.68 0.360062
Target:  5'- cCGGCcgcgUUCGCCGUGgaGGCGggUAc -3'
miRNA:   3'- aGCCGa---GGGCGGCACgaCUGCuuGUu -5'
7321 5' -58.5 NC_001900.1 + 17036 0.7 0.261443
Target:  5'- cCGGCUCCagCGCCGaacGCUGAC-AGCAGc -3'
miRNA:   3'- aGCCGAGG--GCGGCa--CGACUGcUUGUU- -5'
7321 5' -58.5 NC_001900.1 + 15546 0.71 0.242059
Target:  5'- uUCGGcCUCUCGCCGgGCgGugGAGCc- -3'
miRNA:   3'- -AGCC-GAGGGCGGCaCGaCugCUUGuu -5'
7321 5' -58.5 NC_001900.1 + 14279 0.73 0.181034
Target:  5'- aCGGCgucaCCCGCCGUGCU--CGAACc- -3'
miRNA:   3'- aGCCGa---GGGCGGCACGAcuGCUUGuu -5'
7321 5' -58.5 NC_001900.1 + 5076 0.74 0.157653
Target:  5'- cCGGCcCCCGCCGccgUGCUggagcccGACGAGCAu -3'
miRNA:   3'- aGCCGaGGGCGGC---ACGA-------CUGCUUGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.